Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10544 334 2e-89 seq10236 309 9e-82 seq10732 181 3e-43 seq10677 181 3e-43 seq10320 181 3e-43 seq10423 159 1e-36 seq10319 147 7e-33 >seq10544 Length=2759 Score = 334 bits (370), Expect = 2e-89 Identities = 283/342 (83%), Gaps = 22/342 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCC-TGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||| ||| | |||| | ||||| |||||||||||||||| Sbjct 2519 GTACTCATTCCAATTACACGACTCTTGTCGAGCGCATGTATTGTTATTTATTGTCACTAC 2460 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 2459 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 2400 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 2399 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 2340 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2339 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCAT 2280 Query 239 CT---CAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCC 287 || ||||| ||||||| || | ||||| ||||||||||| || | Sbjct 2279 CTCCACAAGGAAGATATAAATGCGATCCGAAAGAGTTACTATGAATCACC-AGTA----- 2226 Query 288 GAAGGGCGTTGGTTT---TTTATCTAATAAATACACCCCTTC 326 ||| | |||||| | | ||||||||||||| |||||| Sbjct 2225 AAAGAATGCTGGTTTGTGTGTGTCTAATAAATACATCCCTTC 2184 Score = 181 bits (200), Expect = 3e-43 Identities = 156/196 (80%), Gaps = 23/196 (12%) Strand=Plus/Minus Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--------- 382 ||| | |||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 2115 TCGAGATTTTACGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGATACG 2056 Query 383 -----------GT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 || ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 2055 GCTTGCGCCGTGTCAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 1996 Query 431 GTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || || | ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1995 GTCTCGCCGTATAAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 1936 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 1935 ATATGACTACTGGCAG 1920 >seq10236 Length=893 Score = 309 bits (342), Expect = 9e-82 Identities = 245/290 (84%), Gaps = 17/290 (6%) Strand=Plus/Minus Query 49 TTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 893 TTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAA 834 Query 109 GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 833 GTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTT 774 Query 169 GATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 228 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 ACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 714 Query 229 CCATCGCCGGCT---CAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACC 277 | ||||| || ||||| ||||||| || | ||||| ||||||||||| Sbjct 713 TCGTCGCCATCTCCACAAGGAAGATATAAATGCGATCCGAAAGAGTTACTATGAATCACC 654 Query 278 AAGGAGCCCCGAAGGGCGTTGGTTT-TTTATCTAATAAATACACCCCTTC 326 || | ||| | |||||| | | ||||||||||||| |||||| Sbjct 653 -AGTA----AAAAGAATGCTGGTTTGTGTGTCTAATAAATACATCCCTTC 609 Score = 181 bits (200), Expect = 3e-43 Identities = 156/196 (80%), Gaps = 23/196 (12%) Strand=Plus/Minus Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--------- 382 ||| | |||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 540 TCGAGATTTTACGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGATACG 481 Query 383 -----------GT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 || ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 480 GCTTGCGCCGTGTCAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 421 Query 431 GTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || || | ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTCTCGCCGTATAAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 361 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 360 ATATGACTACTGGCAG 345 >seq10732 Length=533 Score = 181 bits (200), Expect = 3e-43 Identities = 156/196 (80%), Gaps = 23/196 (12%) Strand=Plus/Minus Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--------- 382 ||| | |||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 388 TCGAGATTTTACGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGATACG 329 Query 383 -----------GT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 || ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 328 GCTTGCGCCGTGTCAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 269 Query 431 GTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || || | ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 268 GTCTCGCCGTATAAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 209 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 208 ATATGACTACTGGCAG 193 >seq10677 Length=761 Score = 181 bits (200), Expect = 3e-43 Identities = 156/196 (80%), Gaps = 23/196 (12%) Strand=Plus/Plus Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--------- 382 ||| | |||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 241 TCGAGATTTTACGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGATACG 300 Query 383 -----------GT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 || ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 301 GCTTGCGCCGTGTCAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 360 Query 431 GTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || || | ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTCTCGCCGTATAAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 420 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 421 ATATGACTACTGGCAG 436 Score = 118 bits (130), Expect = 3e-24 Identities = 135/178 (76%), Gaps = 20/178 (11%) Strand=Plus/Plus Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 60 Query 223 AATGAACCATCGCCGGCT---CAAGG-------CCATGCGATTCGTTA-AGTTATTATGA 271 |||||| | ||||| || ||||| ||||||| || | ||||| ||||| Sbjct 61 AATGAATCGTCGCCATCTCCACAAGGAAGATATAAATGCGATCCGAAAGAGTTACTATGA 120 Query 272 ATCACCAAGGAGCCCCGAAGGGCGTTGGTTT---TTTATCTAATAAATACACCCCTTC 326 |||||| || | ||| | |||||| | | ||||||||||||| |||||| Sbjct 121 ATCACC-AGTA-----AAAGAATGCTGGTTTGTGTGTGTCTAATAAATACATCCCTTC 172 >seq10320 Length=536 Score = 181 bits (200), Expect = 3e-43 Identities = 156/196 (80%), Gaps = 23/196 (12%) Strand=Plus/Minus Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--------- 382 ||| | |||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 531 TCGAGATTTTACGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGATACG 472 Query 383 -----------GT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 || ||| || ||||||||||| ||||||||||||||||||||| |||| Sbjct 471 GCTTGCGCCGTGTCAAGAGACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCA 412 Query 431 GTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || || | ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 411 GTCTCGCCGTATAAAACAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 352 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 351 ATATGACTACTGGCAG 336 >seq10423 Length=587 Score = 159 bits (176), Expect = 1e-36 Identities = 106/117 (91%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-- 447 || ||||||||||| ||||||||||||||||||||| |||||| || | ||||| | Sbjct 54 ACCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAAACAA 113 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 170 >seq10319 Length=316 Score = 147 bits (162), Expect = 7e-33 Identities = 152/196 (78%), Gaps = 20/196 (10%) Strand=Plus/Minus Query 145 AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGT 204 ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 244 AACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGT 185 Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT---CAAGG-------CCATGCGAT 254 |||||||||||||||||||||||| | ||||| || ||||| ||||||| Sbjct 184 TGATAGGGCAGAAATTTGAATGAATCGTCGCCATCTCCACAAGGAAGATATAAATGCGAT 125 Query 255 TCGTTA-AGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT---TTTATCTA 310 || | ||||| ||||||||||| || | ||| | |||||| | | |||| Sbjct 124 CCGAAAGAGTTACTATGAATCACC-AGTA-----AAAGAATGCTGGTTTGTGTGTGTCTA 71 Query 311 ATAAATACACCCCTTC 326 ||||||||| |||||| Sbjct 70 ATAAATACATCCCTTC 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510237737728