Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq26781 143 4e-32 seq26188 143 4e-32 seq25681 140 5e-31 seq20260 136 6e-30 seq23197 113 7e-23 seq31139 107 3e-21 seq32357 89.7 8e-16 seq31192 89.7 8e-16 >seq26781 Length=127 Score = 143 bits (158), Expect = 4e-32 Identities = 98/108 (91%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 ||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||| Sbjct 124 TGATGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGATCAATAATTACAATGATCTATC 66 Query 94 CCCATCACGATGAAATTT-CAAAGATTACCCGGACCTGTCGGCCAAGG 140 | || |||||| |||||| |||||||||||||||||| |||||| ||| Sbjct 65 CACAGCACGATTAAATTTGCAAAGATTACCCGGACCTATCGGCCCAGG 18 >seq26188 Length=127 Score = 143 bits (158), Expect = 4e-32 Identities = 98/108 (91%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 ||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||| Sbjct 125 TGATGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGATCAATAATTACAATGATCTATC 67 Query 94 CCCATCACGATGAAATTT-CAAAGATTACCCGGACCTGTCGGCCAAGG 140 || | |||||| |||||| |||||||||||||||||| |||||| ||| Sbjct 66 CCAAGCACGATTAAATTTGCAAAGATTACCCGGACCTATCGGCCCAGG 19 >seq25681 Length=147 Score = 140 bits (154), Expect = 5e-31 Identities = 85/89 (96%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 146 GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 205 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 GACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 72 Query 206 ACCTGTTATTGCCTCAAACTTCCG-TGGC 233 |||||||||||||||||||||||| |||| Sbjct 71 ACCTGTTATTGCCTCAAACTTCCGCTGGC 43 >seq20260 Length=100 Score = 136 bits (150), Expect = 6e-30 Identities = 88/94 (94%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 92 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 35 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCC 94 ||||||||||| ||| |||| ||||||||||||| Sbjct 34 CTCGTTGAAGATCAATAATTACAATGATCTATCC 1 >seq23197 Length=99 Score = 113 bits (124), Expect = 7e-23 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAG 116 |||||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||| Sbjct 99 TTCCTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAG 40 Query 117 ATTACCCGGACCTGTCGGCCAAGG 140 ||||||||||||| |||||| ||| Sbjct 39 ATTACCCGGACCTATCGGCCCAGG 16 >seq31139 Length=127 Score = 107 bits (118), Expect = 3e-21 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAG 116 |||||||||||||| ||| |||| |||||||||||||||| |||||| |||||| ||||| Sbjct 127 TTCCTCGTTGAAGATCAATAATTACAATGATCTATCCCCAGCACGATTAAATTTGCAAAG 68 Query 117 ATTACCCGGACCTGTCGGCCAAGG 140 ||| ||||||||| |||||| ||| Sbjct 67 ATTCCCCGGACCTATCGGCCCAGG 44 >seq32357 Length=125 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAA 56 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 71 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA 125 >seq31192 Length=127 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAA 56 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 73 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751508561185