Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq62244 233 3e-59 >seq62244 Length=2541 Score = 233 bits (258), Expect = 3e-59 Identities = 225/287 (78%), Gaps = 24/287 (8%) Strand=Plus/Minus Query 55 GTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC----- 109 || || ||| |||| | ||||| |||||||||||||||||||||||||||| Sbjct 750 GTCCCTGGGGCCCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCC 691 Query 110 --TTTGCT-----CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATT 161 ||| || ||||||||||||||||| ||||| ||||||||| || | ||||| Sbjct 690 AATTTTCTGCCACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATT 631 Query 162 TT--GTTGGTTT--------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 || |||||||| | ||||| ||||||||||||||||||||| ||||| Sbjct 630 TTCAGTTGGTTTTGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCA 571 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | | |||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct 570 TTAATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAA 511 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || | |||||||||||||||||||||| |||||||||||||||| Sbjct 510 GCATCTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914582615232