Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6010 161 4e-37 seq21318 100 1e-18 seq15792 100 1e-18 seq30779 95.1 5e-17 seq6744 87.8 7e-15 seq27065 86.0 3e-14 seq27066 80.6 1e-12 >seq6010 Length=454 Score = 161 bits (178), Expect = 4e-37 Identities = 219/308 (71%), Gaps = 37/308 (12%) Strand=Plus/Plus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGT 470 |||||| ||||||||||||||||||||||| | |||||||| ||||| |||||| | Sbjct 1 GTCTTGAAACACGGACCAAGGAGTCTAACACGTGCGCGAGTGTCCGGGTGGCAAACCTGG 60 Query 471 GCGCGTAATGAAAG-------------TGAACGG-------AGGTGGGAA------CCCG 504 ||||| | |||||| | | ||| ||||||||| | || Sbjct 61 GCGCGGAGTGAAAGCAGAGGGCGGCATTAAGCGGTCGCCTGAGGTGGGAAGGGGCGCGCG 120 Query 505 TGAGGGTG--------CACCATCGACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAG 555 || | | | ||||| || |||| | ||| | ||| || || |||||| || Sbjct 121 TGCGCGCGTGCTCCCGCACCACCGGCCGACCTGGATTTTCTT--GAAGGGTTTGAGCCAG 178 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||| || |||||||||||||||||| |||||||||| ||| ||| ||||||||||| Sbjct 179 AGCGTATTTGTTGGGACCCGAAAGATTGTGAACTATGGGTGACCAGGACGAAGCCAGAGG 238 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| || || | | ||| ||||||||||| || || | ||| ||| Sbjct 239 AAACTCTGGTGGAGGTCCGAAGTGATACTGACGTGCAAATCGTTCATCTGAGTTGCCTAT 298 Query 676 AGGGGCGA 683 |||||||| Sbjct 299 AGGGGCGA 306 >seq21318 Length=108 Score = 100 bits (110), Expect = 1e-18 Identities = 84/101 (83%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 90 AAAGCTAAATATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 || ||||||||||| || |||||||||||||| ||||||| |||| |||||||||| Sbjct 104 AAGGCTAAATATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAA 45 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 ||| |||||| |||||||| | ||||| | |||||||||| Sbjct 44 AAGGACTTTGAAAAGAGAG-TCAAAAGTGCTTGAAATTGTT 5 >seq15792 Length=127 Score = 100 bits (110), Expect = 1e-18 Identities = 88/109 (81%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | || ||||||| Sbjct 109 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCAACCCAAGGCTAAAT 50 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 |||| || |||||||||||||| ||||||| |||| ||||||||| Sbjct 49 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 1 >seq30779 Length=127 Score = 95.1 bits (104), Expect = 5e-17 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 29 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGGGGTAAATCCCACCCAAGGCTAAAT 88 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 |||| || |||||||||||||| ||||||| |||| Sbjct 89 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGA 126 >seq6744 Length=127 Score = 87.8 bits (96), Expect = 7e-15 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| || ||||||| | | || ||||||| Sbjct 32 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCTGGTGGTAAATCCCACCCAAGGCTAAAT 91 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTA 128 |||| || |||||||||||||| ||||||| Sbjct 92 ATTGTCAGCGAGAGACCGATAGCGAACAAGTA 123 >seq27065 Length=115 Score = 86.0 bits (94), Expect = 3e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 92 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 33 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCG 473 | |||||||| ||||| |||||| | ||| Sbjct 32 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCG 1 >seq27066 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || || |||||| ||||||||||||||||||||||| Sbjct 92 GATGCTGGCGGAACGGCGCTGATCGACCAGTCTTGAAACACGGACCAAGGAGTCTAACAC 33 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCG 473 | |||||||| ||||| |||||| | ||| Sbjct 32 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078553004450