Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5082 95.1 2e-17 seq4792 95.1 2e-17 seq3457 95.1 2e-17 seq24970 89.7 7e-16 seq19413 82.4 1e-13 seq32329 80.6 4e-13 seq7647 78.8 1e-12 seq12437 75.2 2e-11 >seq5082 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | | | Sbjct 121 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCAT 63 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 62 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 29 >seq4792 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| || | ||| Sbjct 113 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTATCAGAGTCCT 55 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 54 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 21 >seq3457 Length=127 Score = 95.1 bits (104), Expect = 2e-17 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 91 CTTTCAGCACCGGGCAGGTGTCAGACCATATACATCGTTTTACAA-CTTAGCAGAGTCCT 33 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 |||||||||||||||||||||| ||||||||| Sbjct 32 GTGTTTTTAGTAAACAGTCGCTACCCTCTATT 1 >seq24970 Length=127 Score = 89.7 bits (98), Expect = 7e-16 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| | ||||||||| |||| ||| ||| | ||| Sbjct 90 CTTTCAGCACCGGGCAGGTGTCAGACACTATACATCGTTTTACAA-CTTAGCAGAGTCCT 32 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTAT 97 |||||||||||||||||||||| |||||||| Sbjct 31 GTGTTTTTAGTAAACAGTCGCTACCCTCTAT 1 >seq19413 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| ||| | |||||||||||||||||||||| Sbjct 2 GTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTC 60 Query 86 GCTTCCCTCTATTCT 100 ||||||||||||||| Sbjct 61 GCTTCCCTCTATTCT 75 >seq32329 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/81 (83%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 20 GCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAA 79 ||||| ||||| || ||||||||| |||| ||| ||| | |||||||||||||||| Sbjct 127 GCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAA 69 Query 80 ACAGTCGCTTCCCTCTATTCT 100 |||| |||| ||||||||||| Sbjct 68 ACAGCCGCTACCCTCTATTCT 48 >seq7647 Length=127 Score = 78.8 bits (86), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 21 CAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAA 80 |||| ||||| || ||||||||| |||| ||| ||| | ||||||||||||||||| Sbjct 127 CAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCTGTGTTTTTAGTAAA 69 Query 81 CAGTCGCTTCCCTCTATTCT 100 |||| ||| ||||||||||| Sbjct 68 CAGTAGCTACCCTCTATTCT 49 >seq12437 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||| | ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 48 CTTTCAGCACCGGGCATGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 106 Query 67 GTGTTTTTAGTAAACAGTCGC 87 ||||||||||||||||||||| Sbjct 107 GTGTTTTTAGTAAACAGTCGC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693946203307