Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq24970 73.4 4e-11 seq12437 73.4 4e-11 seq5082 73.4 4e-11 seq4792 73.4 4e-11 seq3457 73.4 4e-11 >seq24970 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || |||||| || ||| Sbjct 11 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATAGTGTCTGA 70 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 71 CACCTGCCCGGTGCTGAAAG 90 >seq12437 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || ||||||||| ||| Sbjct 127 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATAGGGTCTGA 68 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | | |||||||||| | ||| Sbjct 67 CACATGCCCGGTGCTGAAAG 48 >seq5082 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| ||||||| || | || || ||||||||| ||| Sbjct 42 GCGACTGTTTACTAAAAACACATGACTCTGCTAAGTTGTAAAACGATGTATAGGGTCTGA 101 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 102 CACCTGCCCGGTGCTGAAAG 121 >seq4792 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||| || | || || ||||||||| ||| Sbjct 34 GCGACTGTTTACTAAAAACACAGGACTCTGATAAGTTGTAAAACGATGTATAGGGTCTGA 93 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 94 CACCTGCCCGGTGCTGAAAG 113 >seq3457 Length=127 Score = 73.4 bits (80), Expect = 4e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| ||||||| || | || || ||||| ||| ||| Sbjct 12 GCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTTGTAAAACGATGTATATGGTCTGA 71 Query 128 CGCCTGCCCGGTGCCGGAAG 147 | |||||||||||| | ||| Sbjct 72 CACCTGCCCGGTGCTGAAAG 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476488406879