Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq7982 113 1e-22 seq3683 98.7 3e-18 seq23741 93.3 1e-16 seq20707 93.3 1e-16 seq12429 93.3 1e-16 seq19556 89.7 2e-15 seq6277 89.7 2e-15 seq32305 86.0 2e-14 >seq7982 Length=177 Score = 113 bits (124), Expect = 1e-22 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 329 TTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGC 388 ||||||||||||||| ||||||||| | |||| | | ||| ||| ||||| | ||| Sbjct 163 TTGGGCTACACACGTACTACAATGGTAATTACAGTGTGAAGCAAAAATGCGAGTTTTAGC 104 Query 389 AAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTG 448 |||| ||| || || ||||| |||| | ||||||| |||| ||||||| | Sbjct 103 TAATCATTAAAAATTAACCTTAGTTCTGATTATTCTCTGCAAGTCGAGAGTATGAAGTAG 44 Query 449 GAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATA 488 |||||||||||||||| ||| || ||||| ||||||||| Sbjct 43 GAATCGCTAGTAATCGCAGAATAGAATGCTGCGGTGAATA 4 >seq3683 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 7 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGGAT 66 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 67 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 110 >seq23741 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||| ||| || Sbjct 117 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTTGAGTAT 58 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 57 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 14 >seq20707 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||||||| || || Sbjct 118 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGTAGTAT 59 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 58 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 15 >seq12429 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | |||| |||||| || Sbjct 14 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCTGTGGAGTAT 73 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 74 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 117 >seq19556 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||| | | | ||||||||||| || Sbjct 98 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACAGAAGATTGTATAAGCGGTGGAGTAT 39 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 ||||||||||| || ||||| ||||| |||||||| Sbjct 38 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAA 2 >seq6277 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||| | | | ||||||||||| || Sbjct 30 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACTGAAGATTGTATAAGCGGTGGAGTAT 89 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 ||||||||||| || ||||| ||||| |||||||| Sbjct 90 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAA 126 >seq32305 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || | |||| | | ||||||||||| || Sbjct 33 TACGACCGCAAGGTTAAAACTCAAAGAAACTTACGGAAGATTGTATAAGCGGTGGAGTAT 92 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACC 95 ||||||||||| || ||||| ||||| |||||| Sbjct 93 GTGGTTTAATTTGATATAACGCAAAGAATCTTACC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502985416640