Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq62244 205 1e-50 seq25681 147 3e-33 >seq62244 Length=2541 Score = 205 bits (226), Expect = 1e-50 Identities = 115/116 (99%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 28 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 87 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 143 >seq25681 Length=147 Score = 147 bits (162), Expect = 3e-33 Identities = 103/116 (89%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 ACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 71 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGC 116 |||||||||||||||||||||| ||||| | || || |||||||||||||||| Sbjct 70 CCTGTTATTGCCTCAAACTTCCGCTGGCTAGGCGCGCAGCAGTCCCTCTAAGAAGC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796279283979