Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq13838 266 6e-69 seq29003 194 3e-47 seq29004 190 3e-46 seq29425 96.9 6e-18 seq10607 96.9 6e-18 >seq13838 Length=344 Score = 266 bits (294), Expect = 6e-69 Identities = 188/218 (86%), Gaps = 13/218 (6%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 344 TATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCC 285 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 284 GACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTAT 225 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGAC 255 ||||||||||||||||||| |||||||||| |||||| ||| | | Sbjct 224 CCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTC 165 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||||||||||| |||||| |||||||||| Sbjct 164 TAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 127 >seq29003 Length=127 Score = 194 bits (214), Expect = 3e-47 Identities = 115/120 (96%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 120 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 61 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 60 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 1 >seq29004 Length=127 Score = 190 bits (210), Expect = 3e-46 Identities = 114/120 (95%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 120 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCATAT 61 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 60 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 1 >seq29425 Length=133 Score = 96.9 bits (106), Expect = 6e-18 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 56 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 1 >seq10607 Length=129 Score = 96.9 bits (106), Expect = 6e-18 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 56 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853823630304