Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq8088 107 4e-21 seq17111 105 1e-20 seq11810 105 1e-20 seq22281 102 2e-19 seq8169 102 2e-19 seq29683 100 6e-19 seq4099 98.7 2e-18 seq13591 96.9 7e-18 seq18553 93.3 9e-17 seq4912 93.3 9e-17 seq20116 91.5 3e-16 seq28118 87.8 4e-15 seq23179 87.8 4e-15 seq18892 87.8 4e-15 seq9091 84.2 5e-14 >seq8088 Length=127 Score = 107 bits (118), Expect = 4e-21 Identities = 103/128 (80%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || | | Sbjct 127 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTT 69 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || | || | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 68 GGGCAGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 10 Query 161 CTTGGTGA 168 |||| ||| Sbjct 9 CTTGTTGA 2 >seq17111 Length=127 Score = 105 bits (116), Expect = 1e-20 Identities = 100/124 (81%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || | | Sbjct 4 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTT 62 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 63 GTGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 121 Query 161 CTTG 164 |||| Sbjct 122 CTTG 125 >seq11810 Length=127 Score = 105 bits (116), Expect = 1e-20 Identities = 100/124 (81%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| || | | Sbjct 5 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTT 63 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 | |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 64 TGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 122 Query 161 CTTG 164 |||| Sbjct 123 CTTG 126 >seq22281 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 102/127 (80%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 127 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 69 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||| || ||| || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 68 GCC-CCTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 11 Query 143 CCAGTTA 149 |||| || Sbjct 10 CCAGCTA 4 >seq8169 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 101/127 (80%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 51 GCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGT 109 |||||||||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | Sbjct 3 GCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-T 60 Query 110 CTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 || || ||| |||| |||||||| |||||| ||||| || | ||||||| |||| ||| Sbjct 61 TTCGGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAA 120 Query 170 CCATTAC 176 ||||| Sbjct 121 TAATTAC 127 >seq29683 Length=127 Score = 100 bits (110), Expect = 6e-19 Identities = 96/119 (81%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-T 100 || ||||| |||||||||||||||| ||||||| ||||||||||| | ||| | | | Sbjct 10 CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAATACTT 68 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCG 159 || |||| | ||||| ||| |||| |||||||| |||||| ||||| || | ||||||| Sbjct 69 GGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCG 126 >seq4099 Length=127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 99/125 (79%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCT 111 |||||||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | | Sbjct 127 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTT 70 Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC 171 |||| || |||| |||||||| |||||| ||||| || | ||||||| |||| ||| Sbjct 69 CAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATA 10 Query 172 ATTAC 176 ||||| Sbjct 9 ATTAC 5 >seq13591 Length=127 Score = 96.9 bits (106), Expect = 7e-18 Identities = 98/124 (79%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTC 112 ||||||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | || Sbjct 127 TTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTC 70 Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172 ||| | | |||| |||||||| |||||| ||||| || | ||||||| |||| ||| | Sbjct 69 AGTCCAAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAA 10 Query 173 TTAC 176 |||| Sbjct 9 TTAC 6 >seq18553 Length=127 Score = 93.3 bits (102), Expect = 9e-17 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 125 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 67 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 | | | ||| || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 66 G-CACTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 9 Query 143 CCAGTTA 149 |||| || Sbjct 8 CCAGCTA 2 >seq4912 Length=127 Score = 93.3 bits (102), Expect = 9e-17 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| |||| |||| || ||||| |||||||||||||||| ||||||| |||||||| Sbjct 2 TCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCT 60 Query 84 GCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||| ||| || | ||| |||| | ||||| ||| |||| |||||||| |||||| | Sbjct 61 GCC-ATTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAA 118 Query 143 CCAGTTA 149 |||| || Sbjct 119 CCAGCTA 125 >seq20116 Length=127 Score = 91.5 bits (100), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCC 118 ||||||| ||||||| ||||||||||| | ||| || | ||| |||| | ||||| || Sbjct 1 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCC 58 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 | ||| |||||||| |||||| ||||| || | ||||||| |||| ||| ||||| Sbjct 59 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTA 118 Query 179 CACCAACTA 187 || |||||| Sbjct 119 CAACAACTA 127 >seq28118 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/126 (79%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 124 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 66 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 | ||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 65 CAACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 8 Query 135 CTCTCA 140 |||||| Sbjct 7 CTCTCA 2 >seq23179 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 64 GTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTG 122 ||| ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| || Sbjct 1 GTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATG 58 Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 || || ||||| |||||| ||||| || | ||||||| |||| ||| ||||| || | Sbjct 59 TGGCTTATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAAC 118 Query 183 AACTAGCTA 191 ||||| ||| Sbjct 119 AACTACCTA 127 >seq18892 Length=127 Score = 87.8 bits (96), Expect = 4e-15 Identities = 99/126 (79%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 123 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 65 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 64 ACACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 7 Query 135 CTCTCA 140 |||||| Sbjct 6 CTCTCA 1 >seq9091 Length=127 Score = 84.2 bits (92), Expect = 5e-14 Identities = 97/124 (78%), Gaps = 5/124 (4%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| |||||| Sbjct 121 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTAT 63 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 62 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 5 Query 135 CTCT 138 |||| Sbjct 4 CTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071276839520