Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq24364 80.6 1e-12 seq28046 78.8 3e-12 seq17464 78.8 3e-12 seq17405 77.0 1e-11 >seq24364 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||||| |||||| ||| || ||||| ||| ||| |||||| |||||||||||||| | Sbjct 127 CTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGC 68 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 ||| ||||||| | | | |||| || |||||||| |||| || Sbjct 67 TACAACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 21 >seq28046 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| | ||||| Sbjct 10 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGACTTTC 69 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 ||||||| | || ||||||| | | | |||| || |||||||| |||| || Sbjct 70 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 125 >seq17464 Length=127 Score = 78.8 bits (86), Expect = 3e-12 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| || |||| Sbjct 9 ACGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCATTTC 68 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 ||||||| | || ||||||| | | | |||| || |||||||| |||| || Sbjct 69 ACCCCTAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 124 >seq17405 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||| |||||||| |||||| ||| || ||||| ||| ||| |||||| |||||||| Sbjct 127 CGCTCTACCTAAATAGATTTCGTAGAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCA 68 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 ||| || | || ||||||| | | | |||| || |||||||| |||| || Sbjct 67 CCCATAGCTACCACTCATCCCGGTATTATGCAACATACATGGGTTCGATCCTTCA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816373865216