Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq8088 86.0 1e-14 seq17111 84.2 4e-14 seq11810 84.2 4e-14 seq8169 82.4 2e-13 seq4099 82.4 2e-13 seq22281 80.6 5e-13 seq13591 80.6 5e-13 seq29683 77.0 6e-12 seq27116 75.2 2e-11 seq23179 75.2 2e-11 seq19830 75.2 2e-11 seq20116 73.4 8e-11 >seq8088 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || |||| Sbjct 123 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGC 65 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 || | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 64 AGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 6 Query 131 GTG 133 || Sbjct 5 TTG 3 >seq17111 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 93/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG-GC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || | || Sbjct 8 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGTGC 66 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 67 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 125 >seq11810 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 93/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG-GGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| || || ||| Sbjct 9 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTTGGC 67 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||||||| Sbjct 68 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTG 126 >seq8169 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCT 77 |||| |||||||| ||||| | ||||||||||| | ||| || || ||||||| | | Sbjct 5 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-T 62 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 | ||||||||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 63 CGGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 118 >seq4099 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCT 77 |||| |||||||| ||||| | ||||||||||| | ||| || || ||||||| | | Sbjct 127 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-T 70 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| ||||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 69 CAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 14 >seq22281 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC-TGGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| || ||| || | ||||| Sbjct 106 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CCTTTAGAAGACTTGGGC 48 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 ||| | |||||||||||||||| | ||| |||||| || |||| Sbjct 47 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 4 >seq13591 Length=127 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 20 TTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTC 78 ||| |||||||| ||||| | ||||||||||| | ||| || || ||||||| | || Sbjct 127 TTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TC 70 Query 79 AGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| |||||||| | ||| |||||| || |||| |||||||||||| || Sbjct 69 AGTCCAAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 15 >seq29683 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 89/116 (77%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGC 70 |||| | |||| |||||||| ||||| | ||||||||||| | ||| | || |||| Sbjct 14 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAATACTTGGGC 72 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||| | |||||||||||||||| | ||| |||||| || |||| |||||||| Sbjct 73 CGTTT-TCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGG 127 >seq27116 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 42 CCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAAC 100 ||||||||||| | ||| || || ||||||| | |||||||||||||||| | ||| Sbjct 122 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATT 65 Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| |||||||||||| || |||| || ||||||||||||| Sbjct 64 ATCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 5 >seq23179 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||| | ||||||||||| | ||| || || ||||||| | |||||||||||||||| Sbjct 5 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGC 62 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 ||| |||||| || |||| |||||||||||| || |||| || ||||| Sbjct 63 TTATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 122 Query 153 ACCTA 157 ||||| Sbjct 123 ACCTA 127 >seq19830 Length=122 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 42 CCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAAC 100 ||||||||||| | ||| || || ||||||| | |||||||||||||||| | ||| Sbjct 121 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCCAATGTGGCTGATCATT 64 Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||| | || |||| |||||||||||| || |||| || ||||||||||||| Sbjct 63 CTCTAAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 4 >seq20116 Length=127 Score = 73.4 bits (80), Expect = 8e-11 Identities = 84/109 (77%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 26 CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT-GGGCCGTGTCTCAGTCCC 84 |||||| ||||| | ||||||||||| | ||| || || ||||||| | |||||||| Sbjct 1 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGTTT-TCAGTCCC 58 Query 85 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 ||||| || | ||| |||||| || |||| |||||||||||| || Sbjct 59 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTG 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997726489344