Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01001674.1 Length=313 Score E Sequences producing significant alignments: (Bits) Value seq55764 77.0 6e-12 seq55763 77.0 6e-12 seq50921 77.0 6e-12 seq50920 77.0 6e-12 >seq55764 Length=2418 Score = 77.0 bits (84), Expect = 6e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 107 TACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGC 166 ||||||||||| ||||| || ||||||||||| || ||||||||| ||| || || ||| Sbjct 2071 TACAATCCGCCCAAGGTGGCCGGCAAGGACGACGTCACCGGCGAACCCCTCGTCCAACGC 2012 Query 167 AAGGACGACa 176 ||||||||| Sbjct 2011 GAGGACGACA 2002 >seq55763 Length=2427 Score = 77.0 bits (84), Expect = 6e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 107 TACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGC 166 ||||||||||| ||||| || ||||||||||| || ||||||||| ||| || || ||| Sbjct 2080 TACAATCCGCCCAAGGTGGCCGGCAAGGACGACGTCACCGGCGAACCCCTCGTCCAACGC 2021 Query 167 AAGGACGACa 176 ||||||||| Sbjct 2020 GAGGACGACA 2011 >seq50921 Length=3328 Score = 77.0 bits (84), Expect = 6e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 107 TACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGC 166 ||||||||||| ||||| || ||||||||||| || ||||||||| ||| || || ||| Sbjct 83 TACAATCCGCCCAAGGTGGCCGGCAAGGACGACGTCACCGGCGAACCCCTCGTCCAACGC 24 Query 167 AAGGACGACa 176 ||||||||| Sbjct 23 GAGGACGACA 14 >seq50920 Length=3253 Score = 77.0 bits (84), Expect = 6e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 107 TACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGC 166 ||||||||||| ||||| || ||||||||||| || ||||||||| ||| || || ||| Sbjct 83 TACAATCCGCCCAAGGTGGCCGGCAAGGACGACGTCACCGGCGAACCCCTCGTCCAACGC 24 Query 167 AAGGACGACa 176 ||||||||| Sbjct 23 GAGGACGACA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898593408672