Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq22659 96.9 6e-18 seq18120 96.9 6e-18 seq17322 96.9 6e-18 seq1063 96.9 6e-18 seq8797 91.5 2e-16 seq7430 91.5 2e-16 seq17058 87.8 3e-15 seq16707 87.8 3e-15 seq16288 87.8 3e-15 seq4829 87.8 3e-15 seq17417 84.2 4e-14 seq1561 84.2 4e-14 seq27954 80.6 4e-13 seq18090 80.6 4e-13 seq15927 80.6 4e-13 seq12719 80.6 4e-13 seq3196 80.6 4e-13 seq2454 80.6 4e-13 seq27955 75.2 2e-11 seq30801 73.4 7e-11 seq3949 73.4 7e-11 >seq22659 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| |||||| || ||||||||| Sbjct 22 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTTGCCCTCTCCGTATTACC 81 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 82 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 124 >seq18120 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| |||||||||||| Sbjct 114 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTACGTATTACC 55 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 54 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 12 >seq17322 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || |||||||| ||| || ||||||||| Sbjct 103 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACGCTCGCCCTCTCCGTATTACC 44 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 43 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 1 >seq1063 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || |||| || ||||||||| Sbjct 110 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCCATCTCCGTATTACC 51 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 50 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 8 >seq8797 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 106 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTAGCCCTCTCCGTATTACC 47 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 46 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 4 >seq7430 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 103 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACCCTCGCCCTCTCCGTATTACC 44 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 43 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 1 >seq17058 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || |||||||| Sbjct 5 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACA 64 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 65 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 107 >seq16707 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || |||||||| Sbjct 115 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCAGTATTACC 56 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 55 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 13 >seq16288 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 4 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 63 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 64 TCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 106 >seq4829 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || || || ||||||||| Sbjct 19 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCACTCTCCGTATTACC 78 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 79 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 121 >seq17417 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| | ||||| || ||| || ||||||||| Sbjct 33 CCACCTACGCACCCTTTACACCCAGTCAATGAGAATAACACTCGCCCTCTCCGTATTACC 92 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||| ||||||||||| |||||| | ||||| Sbjct 93 GCGACTGCTGGCACGAAGTTAGTCAGGGCTT 123 >seq1561 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| | ||||| || ||| || ||||||||| Sbjct 32 CCACCTACGCACCCTTTACACCCAGTCAATGCTAATAACACTCGCCCTCTCCGTATTACC 91 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||| ||||||||||| |||||| | ||||| Sbjct 92 GCGACTGCTGGCACGAAGTTAGTCAGGGCTT 122 >seq27954 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| ||||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 74 CCACCTACGCGCCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq18090 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| || ||| || |||||||||||| |||||| Sbjct 5 CCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACCGCGACTGCTGT 64 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||| |||||| | ||||| | | ||| ||| Sbjct 65 CACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 96 >seq15927 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||| | | ||| || ||||| || ||| || ||||||||| Sbjct 86 CCACCTACGCACCCTTTACACCAAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 27 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 26 GCGACTGCTGGCACGAAGTTAG 5 >seq12719 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | ||| || ||||| || ||| || |||||||||||| ||||| | Sbjct 6 CCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACCGCGACTGCTTG 65 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||| |||||| | ||||| | | ||| ||| Sbjct 66 CACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 97 >seq3196 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||| |||| | ||| || ||||| || ||| || ||||||||| Sbjct 83 CCACCTACGCACCCTTTACGCCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 24 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 23 GCGACTGCTGGCACGAAGTTAG 2 >seq2454 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||||| || | ||| || ||||| || ||| || ||||||||| Sbjct 85 CCACCTACGCACCCTTTACACACAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 26 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 25 GCGACTGCTGGCACGAAGTTAG 4 >seq27955 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 74 CCACCTACGCCCCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 >seq30801 Length=127 Score = 73.4 bits (80), Expect = 7e-11 Identities = 61/75 (81%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | || |||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 77 CCACCTACGCACCATTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 18 Query 248 GCGGCTGCTGGCACG 262 ||| ||||||||||| Sbjct 17 GCGACTGCTGGCACG 3 >seq3949 Length=127 Score = 73.4 bits (80), Expect = 7e-11 Identities = 61/75 (81%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | | ||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 76 CCACCTACGCACACTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 17 Query 248 GCGGCTGCTGGCACG 262 ||| ||||||||||| Sbjct 16 GCGACTGCTGGCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828258371689