Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq62244 123 3e-26 >seq62244 Length=2541 Score = 123 bits (136), Expect = 3e-26 Identities = 154/209 (74%), Gaps = 24/209 (11%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-------TTTGCT--- 54 |||| | ||||| |||||||||||||| ||||||||||||| ||| || Sbjct 739 CCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCCAATTTTCTGCC 680 Query 55 --CGAATACATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTT--GTAGGTT 109 ||||||||||| ||||| ||||| ||||||||| || | ||||||| || |||| Sbjct 679 ACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATTTTCAGTTGGTT 620 Query 110 TCTAGGACCGCCCG--------TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161 | | | | ||| | ||||||| |||| ||||||| ||||| | | |||| | Sbjct 619 T-TGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTA 561 Query 162 ATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||||||| ||||||||||||||||||||| Sbjct 560 ATTGTCAGAGGTGAAATTCTTGGATTTAT 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511665403360