Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq21302 131 3e-28 seq23653 122 1e-25 seq4241 122 1e-25 seq28596 120 5e-25 seq18357 116 6e-24 seq904 116 6e-24 seq25415 114 2e-23 seq17715 114 2e-23 seq25794 113 7e-23 seq8735 107 3e-21 seq27978 104 4e-20 seq31470 102 1e-19 seq561 100 4e-19 seq24526 89.7 8e-16 seq10468 87.8 3e-15 seq32363 86.0 1e-14 seq5810 84.2 3e-14 seq8546 80.6 4e-13 seq4569 80.6 4e-13 seq31469 75.2 2e-11 seq4181 75.2 2e-11 seq29036 73.4 6e-11 >seq21302 Length=127 Score = 131 bits (144), Expect = 3e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 3 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 62 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 63 ATGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 122 >seq23653 Length=127 Score = 122 bits (134), Expect = 1e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| | ||||||| Sbjct 115 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACAACTTTAAT 56 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270 ||||||||||| ||||||||| ||| || |||| |||||||| || ||| ||| Sbjct 55 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGA 1 >seq4241 Length=127 Score = 122 bits (134), Expect = 1e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 164 GGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223 || ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||| Sbjct 127 GGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAAC 68 Query 224 AGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 AGCATAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 16 >seq28596 Length=127 Score = 120 bits (132), Expect = 5e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| |||||||||| Sbjct 127 ACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGC 68 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | | ||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 CTACCCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 19 >seq18357 Length=127 Score = 116 bits (128), Expect = 6e-24 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 169 CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 ||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 127 CGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCT 68 Query 229 AACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 AACACTTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 21 >seq904 Length=127 Score = 116 bits (128), Expect = 6e-24 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| || ||| || ||||||| Sbjct 108 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTAACGTACCACTTTAAT 49 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGA 262 ||||||||||| ||||||||| ||| || |||| |||||||| || Sbjct 48 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGA 2 >seq25415 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| | Sbjct 127 GAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTA 68 Query 230 ACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||| ||| || |||| |||||||| || ||| |||||||| Sbjct 67 ACCATTGGAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 22 >seq17715 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||| | ||| ||| || ||||||| Sbjct 103 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCAAACTCACGTACCACTTTAAT 44 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 ||||||||||| ||||||||| ||| || |||| ||||||| Sbjct 43 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGAT 1 >seq25794 Length=127 Score = 113 bits (124), Expect = 7e-23 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| ||| || ||| ||| || ||||||| Sbjct 102 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACACAACTCACGTACCACTTTAAT 43 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 ||||||||||| ||||||||| ||| || |||| |||||| Sbjct 42 AGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGA 1 >seq8735 Length=127 Score = 107 bits (118), Expect = 3e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 174 TGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCC 233 |||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||| Sbjct 1 TGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCC 60 Query 234 TTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||| || |||| |||||||| || ||| |||||||| Sbjct 61 TTGTAACCGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 102 >seq27978 Length=127 Score = 104 bits (114), Expect = 4e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 125 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 66 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||| |||||||| || ||| |||||||| Sbjct 65 CACCTGCAGCTCCAGGATGTGATGAGTCGACATCG 31 >seq31470 Length=127 Score = 102 bits (112), Expect = 1e-19 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| |||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 87 GACAGATAGGAACCGAACTGTCTAACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 28 Query 216 GGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||| ||||||||| ||| Sbjct 27 AGGCGAACAGCCTAACCCTTGGAACC 2 >seq561 Length=127 Score = 100 bits (110), Expect = 4e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 178 TCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237 || ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| Sbjct 127 TCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGG 68 Query 238 GACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||| |||||||| || ||| |||||||| Sbjct 67 AACAGCCTGCAGCTCCAGGATGTGATGAGTCGACATCG 30 >seq24526 Length=127 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| || |||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 77 GACAGATAGGAACAGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 18 Query 216 GGGCGAACAGCCCAACC 232 ||||||||||| |||| Sbjct 17 AGGCGAACAGCCTAACC 1 >seq10468 Length=76 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| | ||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 76 GACAGATAGGAAGCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 17 Query 216 GGGCGAACAGCCCAAC 231 ||||||||||| ||| Sbjct 16 AGGCGAACAGCCTAAC 1 >seq32363 Length=67 Score = 86.0 bits (94), Expect = 1e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| | Sbjct 1 GAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTA 60 Query 230 ACCCTTG 236 ||||||| Sbjct 61 ACCCTTG 67 >seq5810 Length=127 Score = 84.2 bits (92), Expect = 3e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||| ||| ||| || ||||||| ||||||||||| ||||||||| ||| || |||| Sbjct 1 ACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCT 60 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||| |||| || ||| |||||||| Sbjct 61 CCATGATGTGATGAGTCGACATCG 84 >seq8546 Length=64 Score = 80.6 bits (88), Expect = 4e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 169 CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 ||||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||| Sbjct 1 CGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCT 60 Query 229 AACC 232 |||| Sbjct 61 AACC 64 >seq4569 Length=75 Score = 80.6 bits (88), Expect = 4e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 74 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 15 Query 241 CTACTTCAGCCCCA 254 | || |||| ||| Sbjct 14 CGCCTGCAGCTCCA 1 >seq31469 Length=64 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| || Sbjct 62 CGACGTTCTAAACCCAACTCACGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAAC 3 Query 241 C 241 | Sbjct 2 C 2 >seq4181 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261 ||| || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| | Sbjct 2 CGTACCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTG 61 Query 262 ACGAGCCGACATCG 275 | || |||||||| Sbjct 62 ATTAGTCGACATCG 75 >seq29036 Length=127 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||| ||||||||||| ||||||||| ||| || |||| |||||||| || || Sbjct 126 CCACTTTAATAGGCGAACAGCCTAACCCTTGGAACCGCCTGCAGCTCCAGGATGTGATGA 67 Query 266 GCCGACATCG 275 | ||||||| Sbjct 66 GTAGACATCG 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780289740124