Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq17111 95.1 3e-17 seq11810 95.1 3e-17 seq8088 95.1 3e-17 seq29683 93.3 1e-16 seq22281 93.3 1e-16 seq8169 89.7 1e-15 seq13591 86.0 2e-14 seq4099 86.0 2e-14 seq4912 84.2 5e-14 seq20116 78.8 2e-12 seq23179 75.2 3e-11 >seq17111 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 94/118 (80%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| || | || | Sbjct 8 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGTGC 66 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 67 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 123 >seq11810 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 94/118 (80%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| || | | | | Sbjct 9 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTTGGC 67 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 68 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 124 >seq8088 Length=127 Score = 95.1 bits (104), Expect = 3e-17 Identities = 94/118 (80%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| || | ||| | Sbjct 123 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGC 65 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 || | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 64 AGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 8 >seq29683 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 92/115 (80%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| | ||| | | ||| | Sbjct 14 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAATACTTGGGC 72 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCG 160 ||| | ||||| ||| |||||||| |||| |||||| |||||||| | ||||||| Sbjct 73 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCG 126 >seq22281 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| || ||| || | ||| | Sbjct 106 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CCTTTAGAAGACTTGGGC 48 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||| | ||||| ||| |||||||| |||| |||||| |||||||| Sbjct 47 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 4 >seq8169 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 52 GCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGT 110 |||| |||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | Sbjct 3 GCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-T 60 Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 || || ||| |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 61 TTCGGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 113 >seq13591 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAG 115 |||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | |||| Sbjct 125 CGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAG 68 Query 116 TTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | | | |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 67 TCCAAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 20 >seq4099 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/111 (79%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 54 TTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCT 112 || |||||||||| ||||||| ||||||||||| | ||| || | ||| |||| | | Sbjct 127 TTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTT 70 Query 113 CAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 |||| || |||||||| |||| |||||| |||||||| | ||||||| || Sbjct 69 CAGTCACAATGTGGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 19 >seq4912 Length=127 Score = 84.2 bits (92), Expect = 5e-14 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGAC 105 |||| |||| |||||||||| ||||||| ||||||||||| ||| || | ||| | Sbjct 23 ATCAAGCTTTCGCCCATTGTCAAATATTCTCCACTGCTGCC-ATTTTAGAAGACTTGGGC 81 Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||| | ||||| ||| |||||||| |||| |||||| |||||||| Sbjct 82 CGT-TTTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTA 125 >seq20116 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCC 119 |||||| ||||||| ||||||||||| | ||| || | ||| |||| | ||||| || Sbjct 1 CATTGTCAAATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCC 58 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | ||| |||| |||| |||||| |||||||| | ||||||| || Sbjct 59 AATGTTGCTGATCATTCTCTCAAACCAGCTAAGCATCGTCGGCT 102 >seq23179 Length=127 Score = 75.2 bits (82), Expect = 3e-11 Identities = 94/125 (75%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGC 127 ||||||| ||||||||||| | ||| || | ||| |||| | ||||| ||| |||||| Sbjct 5 AATATTCTCCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGC 62 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 | |||| |||||| |||||||| | ||||||| || | || ||||| | ||||| Sbjct 63 TTATCATTCTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACT 122 Query 188 AGCTA 192 | ||| Sbjct 123 ACCTA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221575381184