Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq25681 140 6e-31 seq20260 138 2e-30 seq26781 120 6e-25 seq26188 120 6e-25 seq23197 89.7 1e-15 seq32357 86.0 1e-14 seq31192 86.0 1e-14 seq31139 84.2 4e-14 >seq25681 Length=147 Score = 140 bits (154), Expect = 6e-31 Identities = 102/116 (88%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG-GCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | || | |||| |||||||||||||||||||||||||| Sbjct 15 GCTTCTTAGAGGGACTGCTGCGCGCCTAGCCAGCGGAAGTTTGAGGCAATAACAGGTCTG 74 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 75 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATTAATCCAACGAGT 130 >seq20260 Length=100 Score = 138 bits (152), Expect = 2e-30 Identities = 85/91 (93%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 ||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||| Sbjct 1 GGATAGATCATTGTAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCA 60 Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || |||||||||||||||||||||||||||| Sbjct 61 GCTCGCGTTGATTACGTCCCTGCCCTTTGTA 91 >seq26781 Length=127 Score = 120 bits (132), Expect = 6e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||| ||||||| ||||| Sbjct 18 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGTGGATAGATCATTG 77 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 78 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGC 126 >seq26188 Length=127 Score = 120 bits (132), Expect = 6e-25 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | ||||||| |||||||| ||||| Sbjct 19 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTTGGGATAGATCATTG 78 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 79 TAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGC 127 >seq23197 Length=99 Score = 89.7 bits (98), Expect = 1e-15 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| |||||||||| ||| | |||||||||||||||| ||||| Sbjct 16 CCTGGGCCGATAGGTCCGGGTAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 75 Query 251 CAATTATTGCTCTTCAACGAGGAA 274 |||||||| |||||||||||||| Sbjct 76 TAATTATTGATCTTCAACGAGGAA 99 >seq32357 Length=125 Score = 86.0 bits (94), Expect = 1e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 277 CCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 123 CCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 72 >seq31192 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 277 CCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 125 CCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 74 >seq31139 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||||| ||| |||||| ||| | |||||||||||||||| ||||| Sbjct 44 CCTGGGCCGATAGGTCCGGGGAATCTTTGCAAATTTAATCGTGCTGGGGATAGATCATTG 103 Query 251 CAATTATTGCTCTTCAACGAGGAA 274 |||||||| |||||||||||||| Sbjct 104 TAATTATTGATCTTCAACGAGGAA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946561028352