Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq26841 89.7 2e-15 seq24364 89.7 2e-15 seq23942 89.7 2e-15 seq17405 89.7 2e-15 seq29107 86.0 2e-14 seq28046 86.0 2e-14 seq17464 86.0 2e-14 seq7084 86.0 2e-14 seq6297 82.4 3e-13 seq31646 77.0 1e-11 seq19758 77.0 1e-11 seq16063 77.0 1e-11 seq24435 75.2 4e-11 seq19342 75.2 4e-11 >seq26841 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||| ||| ||| ||| |||||||| |||||| | ||| |||||||| || | | Sbjct 2 TAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCT 61 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 || ||||||||||||| ||| ||| | ||||| || |||| ||||| ||||||||||| Sbjct 62 AGTGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTA 121 Query 200 GTGC 203 | || Sbjct 122 GAGC 125 >seq24364 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||| ||| ||| ||| |||||||| |||||| | ||| |||||||| ||| | | Sbjct 11 TAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTTGTAGCT 70 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG 196 |||||||||||||||| ||| ||| | ||||| || |||| ||||| |||||||| Sbjct 71 AGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAG 127 >seq23942 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||| ||| ||| ||| |||||||| |||||| | ||| |||||||| || | | Sbjct 1 TAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCT 60 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 ||| |||||||||||| ||| ||| | ||||| || |||| ||||| ||||||||||| Sbjct 61 AGGTGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTA 120 Query 200 GTGC 203 | || Sbjct 121 GAGC 124 >seq17405 Length=127 Score = 89.7 bits (98), Expect = 2e-15 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||| ||| ||| ||| |||||||| |||||| | ||| |||||||| || | | Sbjct 3 TAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCT 62 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 | |||||||||||||| ||| ||| | ||||| || |||| ||||| ||||||||||| Sbjct 63 ATGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTA 122 Query 200 GTGC 203 | || Sbjct 123 GAGC 126 >seq29107 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| |||||||| || | |||||| ||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGGGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq28046 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| |||||||| || | |||||||||| Sbjct 126 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || |||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 66 AGTCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 12 >seq17464 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| |||||||| || | |||||||||| Sbjct 125 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAA 66 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 | ||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 65 ATGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 11 >seq7084 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| |||||||| || | |||||| ||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGCGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq6297 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||| | ||| |||||||| || | ||||||||||||||||| ||| ||| | Sbjct 7 ATGTTGCATAATACCGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGCGT 66 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||| || |||| ||||| |||||||||||| || Sbjct 67 TAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 101 >seq31646 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 92/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||| |||| || | ||| ||| ||| ||| |||||||| |||||| | ||| Sbjct 125 GCCAGATTGAAAGTACTTTAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATA 66 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 |||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| Sbjct 65 CTGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCT 6 Query 182 CCGAA 186 |||| Sbjct 5 ACGAA 1 >seq19758 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 92/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||| |||| || | ||| ||| ||| ||| |||||||| |||||| | ||| Sbjct 125 GCCAGATTGAAAGTACTTTAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATA 66 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 |||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| Sbjct 65 CAGGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCT 6 Query 182 CCGAA 186 |||| Sbjct 5 ACGAA 1 >seq16063 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 |||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| | Sbjct 117 GGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTGCTCTAC 58 Query 184 GAAAACTATTTAGGTAGTGC 203 |||| |||||||||||| || Sbjct 57 GAAATCTATTTAGGTAGAGC 38 >seq24435 Length=127 Score = 75.2 bits (82), Expect = 4e-11 Identities = 92/126 (73%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||| |||| || | ||| ||| ||| ||| |||||||| |||||| | ||| Sbjct 2 GCCAGATTGAAAGTACTTTAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATA 61 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 ||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| Sbjct 62 CCTGGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCT 121 Query 182 CCGAAA 187 ||||| Sbjct 122 ACGAAA 127 >seq19342 Length=127 Score = 75.2 bits (82), Expect = 4e-11 Identities = 92/126 (73%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||| |||| || | ||| ||| ||| ||| |||||||| |||||| | ||| Sbjct 1 GCCAGATTGAAAGTACTTTAATACGTACTGAAGGATCGAACCCATGTATGTTGCATAATA 60 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | |||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| Sbjct 61 CCGTGATGAGTGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTACTCT 120 Query 182 CCGAAA 187 ||||| Sbjct 121 ACGAAA 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688460212736