Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq27036 221 4e-55 seq26862 221 4e-55 seq8447 221 4e-55 seq15025 203 1e-49 seq6425 197 5e-48 seq11705 183 1e-43 seq20540 172 2e-40 seq6684 163 9e-38 seq17220 150 6e-34 seq1111 150 6e-34 seq7819 138 4e-30 seq23158 122 3e-25 seq13838 118 3e-24 seq29714 116 1e-23 seq7325 114 4e-23 seq30410 113 1e-22 seq24404 111 5e-22 seq19014 111 5e-22 seq20539 91.5 5e-16 >seq27036 Length=127 Score = 221 bits (244), Expect = 4e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 68 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 67 GTTCCTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACT 8 Query 509 GGGCAGA 515 ||||||| Sbjct 7 GGGCAGA 1 >seq26862 Length=127 Score = 221 bits (244), Expect = 4e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 394 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 68 Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 67 TCCAGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCA 8 Query 514 GAAATCA 520 ||||||| Sbjct 7 GAAATCA 1 >seq8447 Length=127 Score = 221 bits (244), Expect = 4e-55 Identities = 125/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 68 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 67 ACCAGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 8 Query 525 GCGTCAA 531 ||||||| Sbjct 7 GCGTCAA 1 >seq15025 Length=127 Score = 203 bits (224), Expect = 1e-49 Identities = 121/127 (95%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CTCAACAGGGTCTTCTTTCCCCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 60 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTTGGTGGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 120 Query 412 AGATGAC 418 ||||||| Sbjct 121 AGATGAC 127 >seq6425 Length=127 Score = 197 bits (218), Expect = 5e-48 Identities = 120/127 (94%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 312 CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 |||||||| |||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct 1 CCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGAC 60 Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGTTGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 120 Query 432 ACCTTAA 438 ||||||| Sbjct 121 ACCTTAA 127 >seq11705 Length=104 Score = 183 bits (202), Expect = 1e-43 Identities = 103/104 (99%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 60 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 ACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACT 104 >seq20540 Length=127 Score = 172 bits (190), Expect = 2e-40 Identities = 107/115 (93%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 115 GTCATTTCACAAAGCCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCAGCTGATCG 56 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 |||||||||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 55 TGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGG 1 >seq6684 Length=105 Score = 163 bits (180), Expect = 9e-38 Identities = 99/105 (94%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 |||||| |||||||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 1 GCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAG 60 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 105 >seq17220 Length=105 Score = 150 bits (166), Expect = 6e-34 Identities = 89/93 (96%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 GTCATTTCACAAAGCCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATCG 72 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||||||||| Sbjct 73 TGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 105 >seq1111 Length=127 Score = 150 bits (166), Expect = 6e-34 Identities = 86/88 (98%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGC 60 Query 506 ACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||||||||||||||||| Sbjct 61 ACTTGGCAGAAATCACATTGCGTCAACA 88 >seq7819 Length=76 Score = 138 bits (152), Expect = 4e-30 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 60 Query 436 TAAGAGAGTCATAGTT 451 |||||||||||||||| Sbjct 61 TAAGAGAGTCATAGTT 76 >seq23158 Length=70 Score = 122 bits (134), Expect = 3e-25 Identities = 69/70 (99%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 70 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGC 11 Query 506 ACTGGGCAGA 515 |||||||||| Sbjct 10 ACTGGGCAGA 1 >seq13838 Length=344 Score = 118 bits (130), Expect = 3e-24 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 93 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCATCTTAGGACACCTGCGTTATC 34 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCC 99 |||||||||||||||||||||||||||||||| Sbjct 33 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCC 1 >seq29714 Length=123 Score = 116 bits (128), Expect = 1e-23 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 11 CTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 70 Query 107 CAATGTCATCAACC 120 | ||||| |||||| Sbjct 71 CTATGTCCTCAACC 84 >seq7325 Length=213 Score = 114 bits (126), Expect = 4e-23 Identities = 80/89 (90%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATA--GTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| Sbjct 149 GACGAGGCATTTGGCTACCTTAAGAGAGAGATATAGTTACTCCCGCCGTTTACC--CGCT 92 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||| |||| ||||| |||||||| Sbjct 91 TGGTTGAATCTCTTGACTTTCACATTCAG 63 >seq30410 Length=104 Score = 113 bits (124), Expect = 1e-22 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 60 Query 529 CAACA 533 ||||| Sbjct 61 CAACA 65 >seq24404 Length=160 Score = 111 bits (122), Expect = 5e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 79 CGCCTCCCACTTATTCTACGCCTCCAGCGTCATTTCACAAAGCCGGACTAGAGTCAAGCT 20 Query 294 CAACAGGGTCTTCTTTCCC 312 ||||||||||||||||||| Sbjct 19 CAACAGGGTCTTCTTTCCC 1 >seq19014 Length=127 Score = 111 bits (122), Expect = 5e-22 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 117 CTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCAACCTGA 58 Query 107 CAATGTCATCAACC 120 | ||||| |||||| Sbjct 57 CTATGTCCTCAACC 44 >seq20539 Length=65 Score = 91.5 bits (100), Expect = 5e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 312 CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 |||||||| |||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct 65 CCGCTGATCGTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGAC 6 Query 372 AGTGG 376 ||||| Sbjct 5 AGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634096910432