Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq25006 134 5e-29 seq22439 134 5e-29 seq20685 134 5e-29 seq15478 134 5e-29 seq11323 134 5e-29 seq564 134 5e-29 seq31197 132 2e-28 seq6584 127 7e-27 seq29545 125 2e-26 seq16219 116 1e-23 seq3878 116 1e-23 seq1928 107 7e-21 seq11413 105 2e-20 seq3500 100 1e-18 seq18807 98.7 3e-18 seq13148 98.7 3e-18 seq26314 96.9 1e-17 seq19738 96.9 1e-17 seq959 95.1 4e-17 seq8575 91.5 5e-16 seq9656 89.7 2e-15 seq18714 78.8 3e-12 seq23012 77.0 1e-11 >seq25006 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||||| ||||| ||||||||||||||| Sbjct 26 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCTGAACTCACCCGACAAGGAATT 85 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 86 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 127 >seq22439 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct 109 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCGCCCGACAAGGAATT 50 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 49 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 8 >seq20685 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||||||||||| ||| ||||||||||| Sbjct 112 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCAGACAAGGAATT 53 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 52 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 11 >seq15478 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||||||||||| ||||||||| ||||| Sbjct 10 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAATGAATT 69 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 70 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 111 >seq11323 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||||||||||||| || |||||||||||| Sbjct 111 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACACGACAAGGAATT 52 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 51 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 10 >seq564 Length=127 Score = 134 bits (148), Expect = 5e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| ||||||||| |||| ||||||||||||||| Sbjct 25 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGTAACTCACCCGACAAGGAATT 84 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 85 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACTG 126 >seq31197 Length=127 Score = 132 bits (146), Expect = 2e-28 Identities = 90/101 (89%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| ||||||| |||||| ||||||||||||||| Sbjct 101 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTAGGAACTCACCCGACAAGGAATT 42 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 |||||||||||||| ||||| ||||| |||||||||||| Sbjct 41 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTTACT 1 >seq6584 Length=127 Score = 127 bits (140), Expect = 7e-27 Identities = 87/98 (89%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| |||||| |||| ||||||||| ||||||||||||||| Sbjct 30 GAGACAGTAGGGAAGTCGTTACACCATTCATGCATGTCGGAACTCACCCGACAAGGAATT 89 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||| ||||| ||||| ||||||||| Sbjct 90 TCGCTACCTTAGGACCGTTATGGTTACAGCCGCCGTTT 127 >seq29545 Length=127 Score = 125 bits (138), Expect = 2e-26 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 384 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 126 AGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGG 67 Query 444 ATGGTTATAGTTACCACCGCCGTTTACTG 472 | ||||| ||||| ||||||||||||| Sbjct 66 ACAGTTATGGTTACAGCCGCCGTTTACTG 38 >seq16219 Length=127 Score = 116 bits (128), Expect = 1e-23 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 389 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGT 448 |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1 TTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGT 60 Query 449 TATAGTTACCACCGCCGTTTACTG 472 ||| ||||| ||||||||||||| Sbjct 61 TATTGTTACAGCCGCCGTTTACTG 84 >seq3878 Length=127 Score = 116 bits (128), Expect = 1e-23 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| |||| ||||||||| | |||| |||||||||||||| ||||||||||||||| Sbjct 88 GAGACAGTAGGGAAGTCGTTACACAATTCATGCAGGTCGGAACTCACCCGACAAGGAATT 29 Query 431 TCGCTACCTTAGGATGGTTATAGTTAC 457 |||||||||||||| ||||| ||||| Sbjct 28 TCGCTACCTTAGGACCGTTATGGTTAC 2 >seq1928 Length=127 Score = 107 bits (118), Expect = 7e-21 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| || | ||||||||| |||||| |||||||||||||| ||||||||||||||| Sbjct 54 GAGACAGTAGTGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATT 113 Query 431 TCGCTACCTTAGGA 444 |||||||||||||| Sbjct 114 TCGCTACCTTAGGA 127 >seq11413 Length=127 Score = 105 bits (116), Expect = 2e-20 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 ||||||| | || ||||||||| |||||| |||||||||||||| ||||||||||||||| Sbjct 55 GAGACAGTATGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATT 114 Query 431 TCGCTACCTTAGG 443 ||||||||||||| Sbjct 115 TCGCTACCTTAGG 127 >seq3500 Length=127 Score = 100 bits (110), Expect = 1e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 398 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 || |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| Sbjct 127 TCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTAC 68 Query 458 CACCGCCGTTTACTG 472 | ||||||||||| Sbjct 67 AGCAGCCGTTTACTG 53 >seq18807 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCAC 460 |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| | Sbjct 1 TGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGC 60 Query 461 CGCCGTTTACTG 472 ||| |||||||| Sbjct 61 CGCAGTTTACTG 72 >seq13148 Length=70 Score = 98.7 bits (108), Expect = 3e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 389 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGT 448 |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 70 TTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGT 11 Query 449 TATAGTTAC 457 ||| ||||| Sbjct 10 TATGGTTAC 2 >seq26314 Length=64 Score = 96.9 bits (106), Expect = 1e-17 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 384 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 62 AGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGG 3 Query 444 A 444 | Sbjct 2 A 2 >seq19738 Length=68 Score = 96.9 bits (106), Expect = 1e-17 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCAC 460 |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| | Sbjct 1 TGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTTACAGC 60 Query 461 CGCCGTTT 468 |||||||| Sbjct 61 CGCCGTTT 68 >seq959 Length=127 Score = 95.1 bits (104), Expect = 4e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 ||||||||| |||| ||||||||| |||||| |||||||||||||| ||||||||||||| Sbjct 63 TTGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAA 122 Query 429 TTTCG 433 ||||| Sbjct 123 TTTCG 127 >seq8575 Length=127 Score = 91.5 bits (100), Expect = 5e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 372 AGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 431 |||||| |||| ||||||||| |||||| |||||||||||||| |||||||||||||||| Sbjct 63 AGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAGGAATTT 4 Query 432 CGC 434 ||| Sbjct 3 CGC 1 >seq9656 Length=65 Score = 89.7 bits (98), Expect = 2e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 396 ATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTT 455 |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1 ATTCATGCAGGTCGGAACTCACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATGGTT 60 Query 456 AC 457 || Sbjct 61 AC 62 >seq18714 Length=143 Score = 78.8 bits (86), Expect = 3e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| ||| | | ||||||| |||| ||||||||| |||||| ||||||||| Sbjct 76 AATTTCACTAGGCTAATACTGGAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCG 17 Query 410 GAACTTACCCGACAAG 425 ||||| |||||||||| Sbjct 16 GAACTCACCCGACAAG 1 >seq23012 Length=64 Score = 77.0 bits (84), Expect = 1e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAG 425 ||||||| |||| ||||||||| |||||| |||||||||||||| |||||||||| Sbjct 55 GAGACAGTAGGGAAGTCGTTACACCATTCATGCAGGTCGGAACTCACCCGACAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701251577984