Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq62244 197 4e-48 seq7791 188 2e-45 seq690 188 2e-45 seq9108 168 2e-39 seq21858 136 1e-29 seq11967 134 4e-29 seq31167 129 2e-27 seq31166 125 2e-26 seq4079 120 9e-25 seq20954 116 1e-23 seq33806 89.7 2e-15 >seq62244 Length=2541 Score = 197 bits (218), Expect = 4e-48 Identities = 148/175 (85%), Gaps = 14/175 (8%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGT-------------AAGGTA 390 ||||||||||||||||||||||||||||||||||| |||| ||| | Sbjct 1458 GCATGTATTAGCTCTAGAATTACCACGGTTATCCAAGTAGGTAAAAAAAGACAAAAGAGA 1517 Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GC 449 | ||||||||||| ||||||||||||||||||||| |||||| || | ||||| | || Sbjct 1518 CCATCAAATAAACTATAACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGC 1577 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1578 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1632 Score = 96.9 bits (106), Expect = 1e-17 Identities = 71/80 (89%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||||| Sbjct 1071 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTAC 1130 Query 59 CTCCCCGTGTCGGGATTGGG 78 |||||||||||||||||||| Sbjct 1131 CTCCCCGTGTCGGGATTGGG 1150 >seq7791 Length=127 Score = 188 bits (208), Expect = 2e-45 Identities = 118/127 (93%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||| || ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 127 CTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTT 68 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 67 ACCAGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 8 Query 222 GAATGAA 228 ||||||| Sbjct 7 GAATGAA 1 >seq690 Length=127 Score = 188 bits (208), Expect = 2e-45 Identities = 118/127 (93%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 69 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 128 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 127 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGC 68 Query 129 TCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA 188 ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 67 TCCATCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTA 8 Query 189 TCCTACC 195 ||||||| Sbjct 7 TCCTACC 1 >seq9108 Length=127 Score = 168 bits (186), Expect = 2e-39 Identities = 107/115 (93%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 29 GAGC-CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCG 87 |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 13 GAGCGCCTGTATTGTTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGGAATTTGCG 72 Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 ||||||||||||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 73 CGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAAT 127 >seq21858 Length=85 Score = 136 bits (150), Expect = 1e-29 Identities = 81/85 (95%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| Sbjct 85 AATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGG 26 Query 140 AATCGAACCCTAATTCCCCGTTACC 164 |||||||||||||||| |||||||| Sbjct 25 AATCGAACCCTAATTCTCCGTTACC 1 >seq11967 Length=94 Score = 134 bits (148), Expect = 4e-29 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||| || ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 94 CTTAGAAGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTT 35 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 ||||||| ||||||||||||| |||||||||| Sbjct 34 ACCCGTTACGACCATGGTAGGCCTCTATCCTACC 1 >seq31167 Length=127 Score = 129 bits (142), Expect = 2e-27 Identities = 83/91 (91%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1 CCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTG 60 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||| |||||||||||||||||| | |||||| Sbjct 61 ATATGGCAGAAATTTGAATGAATCGTCGCCG 91 >seq31166 Length=82 Score = 125 bits (138), Expect = 2e-26 Identities = 77/82 (94%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1 CCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCTACCATCGAAAGTTG 60 Query 207 ATAGGGCAGAAATTTGAATGAA 228 |||||||||||||||||||||| Sbjct 61 ATAGGGCAGAAATTTGAATGAA 82 >seq4079 Length=74 Score = 120 bits (132), Expect = 9e-25 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 69 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 128 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 74 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCATTTCTCAGGC 15 Query 129 TCCCTCTCCGGAAT 142 |||||||||||||| Sbjct 14 TCCCTCTCCGGAAT 1 >seq20954 Length=77 Score = 116 bits (128), Expect = 1e-23 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| Sbjct 1 TCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGGTAGGCCTCTATCCT 60 Query 193 ACCATCGAAAGTTGATA 209 ||||||||||||||||| Sbjct 61 ACCATCGAAAGTTGATA 77 >seq33806 Length=1303 Score = 89.7 bits (98), Expect = 2e-15 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 906 ACCATGGTAGGCCTCTATCCTACCATTGAAAGTTGATAGGGCAGAAATTTGAAT 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509381099264