Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq42963 201 2e-49 >seq42963 Length=10355 Score = 201 bits (222), Expect = 2e-49 Identities = 251/336 (75%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA- 62 ||||| ||||| |||||||||||| |||| ||| | ||||||| | | |||||| | Sbjct 3943 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGACACCTACAAACAGATGGAGCCCAA 4001 Query 63 GTGA--TTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | ||| |||||| ||| ||||||| || ||| ||| ||| ||| | | || | Sbjct 4002 GATACGTTCTGGGTGACATCGTACCTTTTGTATTATGGGCCAGCGACTTAATT-TAACGA 4060 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 || || |||| | ||| ||| || || ||||||||| ||||| |||||| | Sbjct 4061 GCAAGCTTAAACCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTTAATAGGGCGCCA 4116 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| || | ||||| |||||||| |||||||| ||| ||||||||||||| | ||| Sbjct 4117 AGTTCGTTGTATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGT 4176 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| | ||||||||||||| ||| |||||||| || ||||||| | || || Sbjct 4177 AACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAAGACTCCGATGACTTGTGGTTA 4236 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||||||||||||| || Sbjct 4237 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGT 4272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972145957376