Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq62426 154 6e-35 seq36806 154 6e-35 >seq62426 Length=1886 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 534 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 593 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 594 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 653 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 654 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 695 Score = 140 bits (154), Expect = 1e-30 Identities = 136/173 (79%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 512 GCACCATCGACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 |||||| || |||| | ||| | ||| || || |||||| ||||| || ||||||| Sbjct 1263 GCACCACCGGCCGACCTGGATTTTCTT--GAAGGGTTTGAGCCAGAGCGTATTTGTTGGG 1320 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||| Sbjct 1321 ACCCGAAAGATTGTGAACTATGGGTGACCAGGACGAAGCCAGAGGAAACTCTGGTGGAGG 1380 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || | | ||| ||||||||||| || || | ||| ||||||||||| Sbjct 1381 TCCGAAGTGATACTGACGTGCAAATCGTTCATCTGAGTTGCCTATAGGGGCGA 1433 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 |||||||||| || || | | || ||||||||| ||||||||||||||||||||||| Sbjct 1098 GATGCTGGCGGAACGGCGCTGATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAC 1157 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCG 475 | |||||||| ||||| |||||| | ||||| Sbjct 1158 GTGCGCGAGTGTCCGGGTGGCAAACCTGGGCGCG 1191 >seq36806 Length=666 Score = 154 bits (170), Expect = 6e-35 Identities = 133/163 (82%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| ||||||| | | || ||||||| Sbjct 482 GAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGTGGTAAATCCCACCCAAGGCTAAAT 541 Query 100 ATTG---GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| || |||||||||||||| ||||||| |||| ||||||||||||| |||||| Sbjct 542 ATTGTCAGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTG 601 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| | ||||| | |||||||||| ||||||||| Sbjct 602 AAAAGAGAG-TCAAAAGTGCTTGAAATTGTTAGGAGGGAAGCG 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078557852150