Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq42963 331 2e-88 seq18118 98.7 3e-18 seq7709 93.3 1e-16 seq33115 89.7 1e-15 seq18160 89.7 1e-15 seq15901 84.2 6e-14 seq3352 82.4 2e-13 seq30459 78.8 2e-12 seq20334 78.8 2e-12 seq19673 78.8 2e-12 >seq42963 Length=10355 Score = 331 bits (366), Expect = 2e-88 Identities = 322/409 (79%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 1389 TACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 1448 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||| ||||||||||||| ||||| |||||| | | |||| ||| || Sbjct 1449 TAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGAGGT 1508 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181 ||||||| | ||| ||| ||| ||| |||| |||| | || || |||| | || Sbjct 1509 GAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTG-AGGATCTTGAGTTCGGGAG 1567 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | |||||| | | |||||| ||||||| ||||||||| | | |||||||| || Sbjct 1568 AGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTG 1627 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| || | |||| | ||||||||| | |||||||||||||||||||||||| Sbjct 1628 GCGAAGGCGGCTCACTGGCCCGATACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACA 1687 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTA 360 ||||||||||||||||||||||||||| |||||||| | || |||||| | |||| Sbjct 1688 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTGGGAAGTTTA 1747 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| | || || ||||||||| | ||| ||||||||||| ||| Sbjct 1748 CTT-TTCAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTAC 1795 >seq18118 Length=127 Score = 98.7 bits (108), Expect = 3e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 1 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 60 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 ||||||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 61 GAGCGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 112 >seq7709 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 1 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 60 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 61 GAGGGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 112 >seq33115 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || | || Sbjct 3 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 62 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 | |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 63 GGGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 114 >seq18160 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| ||||| | |||| | | |||||| ||||||||||| |||||||||||| || || Sbjct 120 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGATGGC 61 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||| ||| | | |||||| |||||| ||||| ||| || |||| |||| Sbjct 60 GAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 9 >seq15901 Length=125 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 262 TAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT 321 ||| |||||| || | |||||||||| | |||| |||||||||||||| ||||||||||| Sbjct 15 TAATACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGT 74 Query 322 CCACGCCCTAAACGAT 337 | | ||||| | |||| Sbjct 75 CTATGCCCTGACCGAT 90 >seq3352 Length=127 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| ||||||||||| |||||||||||| || | || || |||| ||| | | |||| Sbjct 2 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCATTGACTG 61 Query 84 GGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||||| ||||| ||| || |||| |||| Sbjct 62 GGGGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 92 >seq30459 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 262 TAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT 321 ||| |||||| || | |||||||||| | |||| |||||||||||||| |||||||||| Sbjct 113 TAATACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGGCCCTGGTAGT 54 Query 322 CCACGCCCTAAACGAT 337 | | ||||| | |||| Sbjct 53 CTATGCCCTGACCGAT 38 >seq20334 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83 |||||| ||||||||||| |||||||||||| || | || || |||| ||| | | ||| Sbjct 8 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCATTGGCTG 67 Query 84 GGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAG 114 || |||||| ||||| ||| || |||| |||| Sbjct 68 GGTGTAAAGGGTGCGTAGGTGGCTTGT-TAAG 98 >seq19673 Length=127 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 262 TAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT 321 ||| |||||| || | |||||||||| | |||| |||||||||||||| |||||||||| Sbjct 113 TAATACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGCCCCTGGTAGT 54 Query 322 CCACGCCCTAAACGAT 337 | | ||||| | |||| Sbjct 53 CTATGCCCTGACCGAT 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288732963232