Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq42963 136 5e-30 seq1919 98.7 1e-18 seq6749 82.4 1e-13 seq12171 78.8 1e-12 seq30571 77.0 5e-12 seq12173 73.4 5e-11 seq12172 73.4 5e-11 >seq42963 Length=10355 Score = 136 bits (150), Expect = 5e-30 Identities = 182/249 (73%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||| | | |||||| Sbjct 5202 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 5144 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || ||| || ||| ||| || || || Sbjct 5143 AGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGC-----CCCCC--CTAT 5091 Query 121 ACACGT-CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 ||| | ||| || || || |||||| |||||||||||| | | | ||||||| Sbjct 5090 GCACTTGCGTACAT----AGAGGGCCCCCTTATCCCGAAGTTACAGAGGTAAATTGCCGA 5035 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || ||||| | | | |||||| |||| ||||||| | ||||||||||||| Sbjct 5034 GTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGG 4975 Query 240 TTTACGGTA 248 ||| |||| Sbjct 4974 TTTCGGGTA 4966 >seq1919 Length=127 Score = 98.7 bits (108), Expect = 1e-18 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| |||| ||| ||| | ||| Sbjct 115 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAA-CTTAGCAGAGTCCT 57 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCT 100 |||||||||||||||||||||| ||||||||||| Sbjct 56 GTGTTTTTAGTAAACAGTCGCTACCCTCTATTCT 23 >seq6749 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||||||||| || ||||||||| ||| | ||| || | ||| Sbjct 46 CTTTCAGCACCGGGCAGGCGTCAGACCCTATACATCGTTTTA-CAACTTAGCGGAGTCCT 104 Query 67 GTGTTTTTAGTAAACAGTCGCT 88 |||||||||||||||||||||| Sbjct 105 GTGTTTTTAGTAAACAGTCGCT 126 >seq12171 Length=127 Score = 78.8 bits (86), Expect = 1e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| || | |||||||||||||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCTGTGTTTTTAGTAAACAGTC 68 Query 86 GCTTCCCTCTATTCT 100 ||||||||||||||| Sbjct 67 GCTTCCCTCTATTCT 53 >seq30571 Length=93 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||| ||||| || ||||||||| ||| | ||| || | ||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTA-CAACTTAGCGGAGTCCT 71 Query 67 GTGTTTTTAGTAAACAGTCGCT 88 |||||||||||||||||||||| Sbjct 72 GTGTTTTTAGTAAACAGTCGCT 93 >seq12173 Length=127 Score = 73.4 bits (80), Expect = 5e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| || | |||||||||||||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCTGTGTTTTTAGTAAACAGTC 68 Query 86 GCTTCCCTCTATTCT 100 ||| ||||||||||| Sbjct 67 GCTGCCCTCTATTCT 53 >seq12172 Length=127 Score = 73.4 bits (80), Expect = 5e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| || ||||||||| |||| ||| || | |||||||||||||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAA-CTTAGCGGAGTCCTGTGTTTTTAGTAAACAGTC 68 Query 86 GCTTCCCTCTATTCT 100 ||| ||||||||||| Sbjct 67 GCTCCCCTCTATTCT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693947723609