Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq42963 322 1e-85 seq6749 77.0 8e-12 seq1919 77.0 8e-12 seq30571 73.4 1e-10 >seq42963 Length=10355 Score = 322 bits (356), Expect = 1e-85 Identities = 314/407 (77%), Gaps = 23/407 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | || || Sbjct 5374 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTGGAGACAGCGGGGAAGTCATT 5315 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5314 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 5255 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||||||||||||||| || ||||||| || || || | Sbjct 5254 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGAGCTT-GC--------ACTCCTCC 5204 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||||||||||||||||||||| |||||||||||| ||| || || |||| Sbjct 5203 TCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTTCGCAG 5144 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| |||||||| || | |||||| | | | || ||| ||| Sbjct 5143 AGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCCCTATGCACTTG 5084 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || | | | || | |||| |||||||||||| | | |||| Sbjct 5083 CGTA--------------CATAGAGGGCCCCCTTATCCCGAAGTTACAGAGGTAAATTGC 5038 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 | ||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 5037 CGAGTTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACC 4991 >seq6749 Length=127 Score = 77.0 bits (84), Expect = 8e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||| | ||||||||||||||||| ||||||||| || || | || || |||| ||| Sbjct 46 CTTTCAGCACCGGGCAGGCGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 105 Query 260 TGTTTTTAATAAACAGTCGC 279 |||||||| ||||||||||| Sbjct 106 TGTTTTTAGTAAACAGTCGC 125 >seq1919 Length=127 Score = 77.0 bits (84), Expect = 8e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||| | |||||||||||| |||| ||||||||| || || | || ||||||| ||| Sbjct 115 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTG 56 Query 260 TGTTTTTAATAAACAGTCGC 279 |||||||| ||||||||||| Sbjct 55 TGTTTTTAGTAAACAGTCGC 36 >seq30571 Length=93 Score = 73.4 bits (80), Expect = 1e-10 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 ||| | |||||||||||| |||| ||||||||| || || | || || |||| ||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 72 Query 260 TGTTTTTAATAAACAGTCGC 279 |||||||| ||||||||||| Sbjct 73 TGTTTTTAGTAAACAGTCGC 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259952326336