Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq42963 298 1e-78 seq6749 102 2e-19 seq1919 102 2e-19 seq30571 96.9 7e-18 seq12171 75.2 2e-11 >seq42963 Length=10355 Score = 298 bits (330), Expect = 1e-78 Identities = 292/376 (78%), Gaps = 24/376 (6%) Strand=Plus/Minus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| |||||||| | ||||||| | || Sbjct 5379 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTGGAGACAGCGGGGAAG 5320 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 5319 TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 5260 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||| ||||||| | |||| || |||| || Sbjct 5259 CGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGAGC-----TTGC----ACT 5209 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| ||||||||||| |||||||||||||||||| ||||||| || |||||||| || Sbjct 5208 CCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGATTT 5149 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TG- 296 ||||| |||||||||||| |||||||| || ||| ||| ||| || || Sbjct 5148 CGCAGAGCCCTGTGTTTTTGCTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCCCTATGC 5089 Query 297 --------TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 ||||| ||| |||||| |||| ||||||| | | | ||||||||||| Sbjct 5088 ACTTGCGTACATAG--AGGGCCCCCTTATCCCGAAGTTACAGAGGTAAATTGCCGAGTTC 5031 Query 349 CTTAACAATAGTTCTC 364 ||| | ||||||||| Sbjct 5030 CTTCAACATAGTTCTC 5015 >seq6749 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||||||||| |||||||||||| || | ||||||| || |||| Sbjct 46 CTTTCAGCACCGGGCAGGCGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 105 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 106 TGTTTTTAGTAAACAGTCGCT 126 >seq1919 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | |||||||||| |||| Sbjct 115 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCAGAGTCCTG 56 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 55 TGTTTTTAGTAAACAGTCGCT 35 >seq30571 Length=93 Score = 96.9 bits (106), Expect = 7e-18 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 194 CTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTG 253 ||| |||||||||||||| ||||| |||||||||||| || | ||||||| || |||| Sbjct 13 CTTTCAGCACCGGGCAGGTGTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTG 72 Query 254 TGTTTTTGGTAAACAGTCGCT 274 ||||||| ||||||||||||| Sbjct 73 TGTTTTTAGTAAACAGTCGCT 93 >seq12171 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 213 GTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 ||||| |||||||||||| || | ||||||| || ||||||||||| ||||||||||| Sbjct 126 GTCAGACCCTATACATCGTTTTACAACTTAGCGGAGTCCTGTGTTTTTAGTAAACAGTCG 67 Query 273 CTTGGGCCTATTCT 286 ||| ||||||| Sbjct 66 CTTCCCTCTATTCT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061685716608