Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq42963 504 2e-140 seq62806 98.7 3e-18 >seq42963 Length=10355 Score = 504 bits (558), Expect = 2e-140 Identities = 416/499 (83%), Gaps = 6/499 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1793 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1852 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC-CTCTGACCC-C 118 |||||||||||||| |||||||| |||||||||||| |||||||| || ||||| | Sbjct 1853 GTGGTTTAATTCGACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCTATGACCGGC 1912 Query 119 TCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | |||||| ||| ||||| ||||||| | |||| ||||||| ||||||| ||||||| Sbjct 1913 ACCAGAGATGGAGCCTTCCC-TTCGGGGCATAGAGC-ACAGGTGCTGCATGGCTGTCGTC 1970 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1971 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTT 2030 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGG 297 || | |||| ||||| |||||||||| |||||||||||| || ||| |||||||||||| Sbjct 2031 GCTACCATTTAGTTGAGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGG 2090 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| |||||| | |||||||||||||||||||||||| Sbjct 2091 GATGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGT 2150 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| ||| || || || | ||||||| || |||| | |||||||||||| Sbjct 2151 GACAATGGGACGCTAAGGGGCAACCCTTCGCAAATCTCAAAAAGCCG-TCTCAGTTCGGA 2209 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 ||| |||||||||||| |||||| ||||||||||||||||||| ||||||||||| Sbjct 2210 TTGGGCTCTGCAACTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGC 2269 Query 478 TACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 2270 CACGGTGAATACGTTCCCG 2288 >seq62806 Length=2190 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||||||||||||| |||||||||| || |||||| | | ||||||||||| || Sbjct 1912 TACGACCGCAAGGTTAAAACTCAAAGAAACTGACGGAAGATTGTATAAGCGGTGGAGTAT 1971 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 1972 GTGGTTTAATTTGATATAACGCAAAGAATCTTACCAACCCTTGA 2015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502988815680