Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq29803 165 1e-38 seq34845 161 2e-37 seq20046 154 2e-35 seq62820 147 3e-33 seq66418 111 3e-22 seq28666 86.0 1e-14 seq64035 73.4 6e-11 >seq29803 Length=151 Score = 165 bits (182), Expect = 1e-38 Identities = 93/94 (99%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 94 TATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAA 35 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||| Sbjct 34 CTAAGAACGGCCATGCACCACCACCCATAGAATC 1 >seq34845 Length=350 Score = 161 bits (178), Expect = 2e-37 Identities = 92/94 (98%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 94 TATTTAGCAGGTTAAGGTCTCGTTCGTTAATGGAATTAACCAGACAAATCACTCCACCAA 35 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||| Sbjct 34 CTAAGAACGGCCATGCACCACCACCCATAGAATC 1 >seq20046 Length=101 Score = 154 bits (170), Expect = 2e-35 Identities = 85/85 (100%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 42 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||| Sbjct 41 ATCAAGAAAGAGCTATCAATCTGTC 17 >seq62820 Length=1627 Score = 147 bits (162), Expect = 3e-33 Identities = 103/116 (89%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 ACTCGTTGGATTAATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 127 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGC 116 |||||||||||||||||||||| ||||| | || || |||||||||||||||| Sbjct 126 CCTGTTATTGCCTCAAACTTCCGCTGGCTAGGCGCGCAGCAGTCCCTCTAAGAAGC 71 >seq66418 Length=7988 Score = 111 bits (122), Expect = 3e-22 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6081 AATCACTCCACCAACCAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 6140 Query 249 TCAA 252 |||| Sbjct 6141 TCAA 6144 >seq28666 Length=127 Score = 86.0 bits (94), Expect = 1e-14 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 212 GCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 47 >seq64035 Length=57579 Score = 73.4 bits (80), Expect = 6e-11 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5119 CCACACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 5161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796281028473