Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq62782 363 3e-98 seq64558 260 2e-67 seq64679 107 3e-21 seq64724 78.8 2e-12 seq42963 78.8 2e-12 >seq62782 Length=3051 Score = 363 bits (402), Expect = 3e-98 Identities = 244/275 (89%), Gaps = 13/275 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 918 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 977 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 978 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 1037 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1038 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1097 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-------------GGGACTAA 258 |||||||||||||||| |||||||||| |||||| ||| | |||| Sbjct 1098 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCCCGAAATATAAATAAACGACTCTAA 1157 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| |||||| |||||||||| Sbjct 1158 AGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1192 >seq64558 Length=8841 Score = 260 bits (288), Expect = 2e-67 Identities = 168/184 (91%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||| |||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 1900 CATCTGTAGGGTAAAACTAACCTGTCTCACAACCGTCTAAACCCAGCTCACATTCCCTAT 1959 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || Sbjct 1960 TAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCACAATGATAGGAAGAGCCAAC 2019 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||| Sbjct 2020 ATCGAAGGATCAAAAAGTGATGTTGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 2079 Query 212 TGTG 215 |||| Sbjct 2080 TGTG 2083 >seq64679 Length=7811 Score = 107 bits (118), Expect = 3e-21 Identities = 90/111 (81%), Gaps = 7/111 (6%) Strand=Plus/Plus Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||| |||||| ||||||||||||| |||||||||||||| |||||||||| Sbjct 2536 TCCCACGCTTGGCGAATTCTGCTTCACAATGATAGGAAGAGCA-------AAGGATCAAA 2588 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||| || || |||||||| |||||| ||||||||||||||||||||||| Sbjct 2589 AAGTGACATCACTATGAACACTTGGCCACCACAAGCCAGTTATCCCTGTGG 2639 >seq64724 Length=3031 Score = 78.8 bits (86), Expect = 2e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2547 GGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAA 2592 >seq42963 Length=10355 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| | || ||||| | ||| Sbjct 5942 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACC 5883 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 5882 CTTGGGACC---TTCTCCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACGAC 5826 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | || |||| |||||||| | ||| ||||| Sbjct 5825 GCCGTCGATATGGACTCTTGGGCGTCATCAGCCTGTTATCCCCGGCGTACCTTTT 5771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853825561248