Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq42963 275 1e-71 seq62806 132 1e-28 >seq42963 Length=10355 Score = 275 bits (304), Expect = 1e-71 Identities = 265/336 (79%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 1361 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 1304 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 1303 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 1244 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 1243 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCA 1184 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| ||| | || ||| Sbjct 1183 CCAACTAGCTAATCAGACGCGGGCCGATCTTTCGGCGATA------AA--------TCTT 1138 Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || ||||| ||| | ||| |||||||||| |||||| ||| | || || | | Sbjct 1137 TC-CCCGTAAGGGCTTATCCGGTATTAGCACAAGTTTCCCTGTGTTGTTCCGAACCAAAA 1079 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | |||| | || ||||||||||||| |||||| Sbjct 1078 GGTACGTTCCCACGCGTTACTCACCCGTCTGCCGCT 1043 >seq62806 Length=2190 Score = 132 bits (146), Expect = 1e-28 Identities = 142/181 (78%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 |||||| |||| |||| |||| || ||||| |||||||||||||||| ||||||| Sbjct 1691 CCTTCTGATCACCCACGTAACATTA-CTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 1633 Query 76 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||| |||||||| Sbjct 1632 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 1575 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| || | ||||||| |||| ||| ||||| || |||||| |||||| Sbjct 1574 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 1515 Query 195 C 195 | Sbjct 1514 C 1514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071279262240