Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq42963 297 7e-78 seq14372 80.6 1e-12 seq15125 77.0 1e-11 seq3013 77.0 1e-11 seq9743 75.2 4e-11 >seq42963 Length=10355 Score = 297 bits (328), Expect = 7e-78 Identities = 399/549 (73%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCT 111 || |||||||||||||||| || |||||| || | |||||||| |||||||||||| Sbjct 4384 GGTATTCGGAGTTTGGTTGGGTTTGGTAAGACGGTAAGTCCCCCTAGCCCATCCAGTGCT 4325 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||| || | | || ||| || |||||||| ||||| ||||||||||||| Sbjct 4324 CTACCCCCTGAGGTATTCATCCGAGGCGATACCTAAATATCTTTCGCGGAGAACCAGCTA 4265 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | |||||||||||||||||||||||| ||||| |||||| |||||||| Sbjct 4264 TTTCCCAGTTTGATTGGCCTTTCACCCCTAACCACAAGTCATCGGAGTCTTTTTCAACAG 4205 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 | ||||||||||||| || ||||| ||||||||||| ||||| ||||||| Sbjct 4204 ACACCCGTTCGGTCCTCCAGTGAGTGTTACCTCACCTTCAACCTGCTCATGGCTAGATCA 4145 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 || | ||||||||| | ||| ||||||||| ||||||||||||||||| Sbjct 4144 CTAGGTTTCGGGTCTAATACAACGAACTTGG-CGCCCTATTAAGACTCGCTTTCGCTACG 4086 Query 352 GCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAA 411 |||| || ||| |||| || || || || |||| ||| ||| | ||||| Sbjct 4085 CCTACACCTATCGGTTTAAGCTTGCTCGTTAAATTAAG-TCGCTGGCCCATAATACAAAA 4027 Query 412 GGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 || ||| |||||| | || || ||| ||||| | | ||||||| || Sbjct 4026 GGTACGATGTCACCCAGAACGTAT------CTTGGGCTCCATCTGTTTGTAGGTGTCCGG 3973 Query 472 TTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 3972 TTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTG 3914 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 || | ||||||||| ||||||| |||||||| |||||||||| ||| |||| || Sbjct 3913 GTTCACTATCGGTCGATGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 3854 Query 591 GAAATTTCA 599 |||||| Sbjct 3853 AGGATTTCA 3845 >seq14372 Length=127 Score = 80.6 bits (88), Expect = 1e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| |||||| ||||| ||| ||| |||||| ||||||| Sbjct 36 ACGCTCTACCTAAATAGATTTCGTAGAGAACTAGCTAACACTAAGCTTGATTAGCCTTTC 95 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 96 ACCCCTAGCTACCGCTCATCCC 117 >seq15125 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 36 ACGCTCTACCTAAATAGATTTCGTAGAGGACTAGCTAACACTAAGCTTGATTAGCCTTTC 95 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 96 ACCCCTAGCTACCGCTCATCCC 117 >seq3013 Length=127 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||||||| |||||| ||| || ||||| ||| ||| |||||| ||||||| Sbjct 36 ACGCTCTACCTAAATAGATTTCGTAGAGCACTAGCTAACACTAAGCTTGATTAGCCTTTC 95 Query 195 ACCCCTATCCACAGGTCATCCC 216 ||||||| | || | ||||||| Sbjct 96 ACCCCTAGCTACCGCTCATCCC 117 >seq9743 Length=127 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 ||| || ||||| ||| ||| |||||| |||||||||||||| | || | ||||||| | Sbjct 5 GAGTACTAGCTAACACTAAGCTTGATTAGCCTTTCACCCCTAGCTACCGCTCATCCCGGC 64 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 | | | |||| || |||||||| |||| || Sbjct 65 ATTATGCAACATACATGGGTTCGATCCTTCA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816377972992