Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq42963 324 3e-86 >seq42963 Length=10355 Score = 324 bits (358), Expect = 3e-86 Identities = 320/399 (80%), Gaps = 15/399 (4%) Strand=Plus/Minus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | | ||||||||||||||| ||| |||||| ||||| |||||||| Sbjct 4216 CTTTTTCAACAGACACCCGTTCGGTCCTCCAGTGAGT-GTTACCTCACCTT-CAACCTGC 4159 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146 ||| || |||||| | ||||| |||||||| | | | ||| || | ||||||| ||| Sbjct 4158 TCAT-GGCTAGATCACTAGGTTT-CGGGTCTAATAC--AACGAACTTGGCGCCCTATTAA 4103 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||||||||| | ||||| | |||||||| || | ||| ||||||| Sbjct 4102 GACTCGCTTT-CGCTACGCCTACACCTATCGGTTTAAGCTT-GCTCGTTAAATTAAGTCG 4045 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261 ||| ||||| |||||||||||||| |||||||| || | |||||||| ||| || Sbjct 4044 CTGGCCCATAATACAAAAGGTACGATGTCACCCAGAACGTATCTTGGGCTCCATCTGTTT 3985 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| | | |||||||||| ||||||||||||||||| |||||| |||||| ||||||| Sbjct 3984 GTAGGTGTCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 3926 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 ||||||||||| |||||||||||||| | || |||| |||| |||||||| |||||||| Sbjct 3925 CTCACGGTACTGGTTCACTATCGGTCGATGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 3866 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||||| |||| |||| ||| | |||||| Sbjct 3865 CCATGTTCAGACAGGATTTCACGTGTCCCGCCTTACTCG 3827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240765235072