Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq42963 248 1e-63 seq18160 96.9 6e-18 seq18118 96.9 6e-18 seq7709 91.5 2e-16 seq33115 87.8 3e-15 seq20334 80.6 4e-13 seq3352 80.6 4e-13 seq29294 75.2 2e-11 >seq42963 Length=10355 Score = 248 bits (274), Expect = 1e-63 Identities = 231/291 (79%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 1678 CCCACGCTTTCGTGCCTCAGCGTCAGTATCGGGCCAGTGAGCCGCCTTCGCCACTGGTGT 1619 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | || ||||||||| |||||||| |||||| || | |||| | ||||||| | || Sbjct 1618 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTCCCGAAC 1559 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| |||| ||||| |||| | ||| ||||||| | | |||||| |||||| Sbjct 1558 TCAAGATCCTCAGTATCAAAGGCAGT-TCTGGAGTTGAGCTCCAGGATTTCACCTCTGAC 1500 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || ||||||||| | |||||||| |||| | | |||| |||||| ||| ||| | Sbjct 1499 TTAAAGACCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTC 1440 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||| ||||||||| ||||||||| | |||| Sbjct 1439 GTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCTTGCGGTA 1389 >seq18160 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || |||| || ||||||||| Sbjct 18 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACTCGCCATCTCCGTATTACC 77 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 78 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 120 >seq18118 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || |||||||| ||| || ||||||||| Sbjct 103 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACGCTCGCCCTCTCCGTATTACC 44 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 43 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 1 >seq7709 Length=127 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 103 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACCCTCGCCCTCTCCGTATTACC 44 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 43 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 1 >seq33115 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| | ||| || ||||||||| Sbjct 105 CCACCTACGCACCCTTTACACCCAGTCAATGCGAATAACACCCGCCCTCTCCGTATTACC 46 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||| | ||||| | | ||| ||| Sbjct 45 GCGACTGCTGGCACGAAGTTAGTCAGGGCTTCTCCTTCAAGTA 3 >seq20334 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| ||| || ||||| || ||| || ||||||||| Sbjct 89 CCACCTACGCACCCTTTACACCCAGCCAATGCGAATAACACTCGCCCTCTCCGTATTACC 30 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 29 GCGACTGCTGGCACGAAGTTAG 8 >seq3352 Length=127 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | |||||||| |||| | ||| || ||||| || ||| || ||||||||| Sbjct 83 CCACCTACGCACCCTTTACCCCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 24 Query 248 GCGGCTGCTGGCACGTAGTTAG 269 ||| ||||||||||| |||||| Sbjct 23 GCGACTGCTGGCACGAAGTTAG 2 >seq29294 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| | ||||||||||||| | ||| || ||||| || ||| || ||||||||| Sbjct 74 CCACCTACGCCCCCTTTACACCCAGTCAATGCGAATAACACTCGCCCTCTCCGTATTACC 15 Query 248 GCGGCTGCTGGCAC 261 ||| |||||||||| Sbjct 14 GCGACTGCTGGCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828260186243