Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq42963 282 7e-74 seq6720 136 6e-30 >seq42963 Length=10355 Score = 282 bits (312), Expect = 7e-74 Identities = 227/274 (83%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| ||||||||||||||||| ||||||| ||| || ||||| | | Sbjct 6113 GAGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTACATAGCTATGCTG 6054 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||| | | |||||||||| || ||||||||||||||||||| Sbjct 6053 CACTGCCGCTGGCGCGACAACAGCTCCACCAGAGGTACGTTCATCCCGGTCCTCTCGTAC 5994 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||||| ||||||||| |||| || |||||| | |||||||||||||||||||| | Sbjct 5993 TAGGGACAAATCCTCTCAATATTCCAACACCCACGGCAGATAGGGACCGAACTGTCTCAC 5934 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 5933 GACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 5874 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 5873 TTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 5840 >seq6720 Length=179 Score = 136 bits (150), Expect = 6e-30 Identities = 102/120 (85%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 156 GACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||||||| Sbjct 57 GACAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAAT 116 Query 216 GGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| ||||||||| ||| || |||| |||||||| || ||| |||||||| Sbjct 117 AGGCGAACAGCCTAACCCTTGGAACCGCCTACAGCTCCAGGATGTGATGAGTCGACATCG 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780291449588