Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq34564 136 1e-29 >seq34564 Length=203146 Score = 136 bits (150), Expect = 1e-29 Identities = 391/583 (67%), Gaps = 44/583 (8%) Strand=Plus/Minus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 ||||| || | |||| |||||||||| ||| |||||||| ||| | |||||| |||| Sbjct 160057 TCGACGGTTGTGTTCTGGTCGTTCCGCATCATGGTCGGCCTCGGCATGCTGATG--CTTC 160000 Query 64 ACC--GGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGA-----TGTACACGTCC 116 | || ||| | ||| ||||||| ||| || ||| |||| | | ||| | Sbjct 159999 TGCTTGGCCTA-TGGAGCGTGTGGCTA-CGCTGG--CGA-AAGAGCCTCTATGAACGGAC 159945 Query 117 AAGCCGTTCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCC 176 | |||||| | || ||||||||||| ||||| |||||||||| || ||| Sbjct 159944 CTG--GTTCCTTCGTTTCGCAACTTGGATGGGCCCCTCCGGACTGATCGCGATACTGGCC 159887 Query 177 GGCTGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACG 236 || |||| ||| ||||| |||||||| ||||| |||||||| |||||| | ||||| || Sbjct 159886 GGGTGGTACACGACGGAGATCGGCCGCCAGCCTTGGGTGGTTTACGGCGTCATGCGAACC 159827 Query 237 GCGGATGCGTCCTCCGGGCAT--AGC-CTGGTGCAGATGACGATTACGCTGGTGTTGTTC 293 ||| || ||| ||| || |||| || || ||| ||||| | ||||| Sbjct 159826 AAGGACGCCGTCTCGAACCATTCGGCGCTGGCGC---TGTCGACGACGCTCATCGTGTTC 159770 Query 294 GTGGTGGTGTACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGC 353 | ||| |||||||||| ||||||| ||||| | |||||||| | || || ||| Sbjct 159769 ATCGTGATGTACTTCGCCGTGTTCGGCACCGGTGTCAGCTACATGCTCAAGCTCGT-CGC 159711 Query 354 AAAGGTCCGCAGACC-CA-CGAAGGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAAC 411 |||| | ||| || || ||| | | || | || | || || || || ||| | Sbjct 159710 GAAGGGAC-CAGGCCACAGCGAGGACAATAACGCGCCGCA---TGAGCCCGGTCAG--TC 159657 Query 412 GCA--CGCCAGCCCGTCCGTTGTCTGCCGCCGATGATGGCAGCGATGACGACCACACCCA 469 ||| ||| ||||| ||| |||| ||||| || | || |||| || Sbjct 159656 GCAGCGGCCCGCCCGCCCGCTGTCGGCCGCGCCCGACGACATCGAT----------CCGG 159607 Query 470 CATCCAGCACAAGGGGCATTGA-GATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATC 528 | || | | || | | |||||||| |||||||| ||||| |||| | ||| Sbjct 159606 CGCTGGGCTGAGGAGGAAAACACCATGGGTATCGATCTTCCTCTGATTTGGGCGATCATC 159547 Query 529 ATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 571 ||| |||||| | |||||||| || ||||||| ||||||| Sbjct 159546 ATCGGCTTCGGATTGATGATGTATGTCATCATGGATGGCTTCG 159504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1723640365216