Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq38361 89.7 9e-16 seq64109 78.8 2e-12 seq60748 78.8 2e-12 seq48002 78.8 2e-12 seq35944 78.8 2e-12 >seq38361 Length=167166 Score = 89.7 bits (98), Expect = 9e-16 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 78 CTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCG 137 ||||||| | | ||| | |||| ||| ||||| | | || || || || ||||| | | Sbjct 96198 CTATCCACCTTCAGCGCGGCAATGAACGCTTCCT-GCGGGATGTCGACCTTGCCGAACTG 96140 Query 138 CTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTC 197 | ||| || || || |||| |||||||| || ||||||||||| ||||| | ||| Sbjct 96139 CCGCATCTTCTTCTTGCCTTCCTTCTGCTTCTCCAGAAGCTTGCGCTTGCGGCTGATGTC 96080 Query 198 ACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAAT 257 ||||||||||| || || |||| ||| | || || |||| ||||| || Sbjct 96079 GCCGCCGTAGCACTTCGCGGTGACGTCCTTGCGCAGCGCGCGCACGGTTTCGCGCGCGAT 96020 Query 258 GATCTGCCCGCCAATGGCGGCCTGGATCG 286 | || ||||| || || |||||||||| Sbjct 96019 CACCTTGCCGCCGATCGCCGCCTGGATCG 95991 >seq64109 Length=2730 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 158 CCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCA 217 |||| |||||||| |||||||| ||||| ||| | | ||| ||||||||||| |||||| Sbjct 2563 CCTTCTGCTTCTCGAGCAGCTTTCGCTTCCGGGTGATGTCGCCGCCGTAGCACTTGGCCG 2504 Query 218 GTACGTTCTTTCTGAGAGCCT 238 ||||| ||||| || |||| Sbjct 2503 TTACGTCCTTTCGCAGCGCCT 2483 >seq60748 Length=2314 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 158 CCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCA 217 |||| |||||||| |||||||| ||||| ||| | | ||| ||||||||||| |||||| Sbjct 1650 CCTTCTGCTTCTCGAGCAGCTTTCGCTTCCGGGTGATGTCGCCGCCGTAGCACTTGGCCG 1709 Query 218 GTACGTTCTTTCTGAGAGCCT 238 ||||| ||||| || |||| Sbjct 1710 TTACGTCCTTTCGCAGCGCCT 1730 >seq48002 Length=2312 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 158 CCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCA 217 |||| |||||||| |||||||| ||||| ||| | | ||| ||||||||||| |||||| Sbjct 665 CCTTCTGCTTCTCGAGCAGCTTTCGCTTCCGGGTGATGTCGCCGCCGTAGCACTTGGCCG 606 Query 218 GTACGTTCTTTCTGAGAGCCT 238 ||||| ||||| || |||| Sbjct 605 TTACGTCCTTTCGCAGCGCCT 585 >seq35944 Length=1244 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 158 CCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCA 217 |||| |||||||| |||||||| ||||| ||| | | ||| ||||||||||| |||||| Sbjct 1077 CCTTCTGCTTCTCGAGCAGCTTTCGCTTCCGGGTGATGTCGCCGCCGTAGCACTTGGCCG 1018 Query 218 GTACGTTCTTTCTGAGAGCCT 238 ||||| ||||| || |||| Sbjct 1017 TTACGTCCTTTCGCAGCGCCT 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 841051849351