Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq42963 268 2e-69 seq62806 111 4e-22 >seq42963 Length=10355 Score = 268 bits (296), Expect = 2e-69 Identities = 305/411 (74%), Gaps = 30/411 (7%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 1361 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 1302 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 1301 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 1242 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 1241 TGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCACC 1182 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | ||| ||||| | ||| || ||||| Sbjct 1181 AACTAGCTAATCAGACGCGGG-----CCGATCTT--TCGGCGATAA-------ATCTTTC 1136 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||| |||||||||| |||||| ||| | || ||| ||| Sbjct 1135 CCCGTAAGGGCTTATCCGGTATTAGCACAAGTTTCCCTGTGTTGTTCCGAACCAAAAGGT 1076 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| ||| || || | | || || Sbjct 1075 ACGTTCCCACGCGTTACTCACCCGTCTGCCGCT-------GACGTA---------TTGCT 1032 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1031 ACGCCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAG 981 >seq62806 Length=2190 Score = 111 bits (122), Expect = 4e-22 Identities = 136/181 (75%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 19 GCCTTCT--TCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||| ||| |||| ||| || |||| |||| |||||||||| ||||||| Sbjct 1692 GCCTTCTGATCACCCACGTAACATTACTCGATCAAGCTTTCGCCCATTGTCAAATATTCT 1633 Query 77 CCACTGCTGCCTCCCGTAGGAGTC-TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 ||||||||||| | ||| || | ||| |||| | ||||| ||| |||||||| |||| Sbjct 1632 CCACTGCTGCC-CTTTTAGAAGACTTGGGCCGT-TTTCAGTCCCAATGTGGCTGATCATT 1575 Query 136 CTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| |||||||| | ||||||| || | || ||||| | |||||| |||||| Sbjct 1574 CTCTCAAACCAGCTAAGCATCGTCGGCTTGTTGAATAATTACTACAACAACTACCTAATC 1515 Query 196 C 196 | Sbjct 1514 C 1514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221578143808