Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq42963 428 1e-117 seq62806 132 1e-28 seq18118 122 3e-25 seq7709 116 1e-23 seq33115 114 4e-23 seq18160 114 4e-23 seq3352 105 2e-20 seq20334 100 9e-19 seq29294 87.8 5e-15 seq23025 77.0 1e-11 >seq42963 Length=10355 Score = 428 bits (474), Expect = 1e-117 Identities = 305/349 (87%), Gaps = 1/349 (0%) Strand=Plus/Plus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1155 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 1214 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 1215 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 1274 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||||| Sbjct 1275 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 1334 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||| | |||| |||||||||| | | |||||||||||||||||| Sbjct 1335 AGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGACGGTACCGC 1394 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 | || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1395 AAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 1454 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||| ||| |||||||||||||||||||| || | ||||||| Sbjct 1455 TGCTCGGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTC 1502 >seq62806 Length=2190 Score = 132 bits (146), Expect = 1e-28 Identities = 191/262 (73%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||| | |||| | | |||| ||||||| |||| | |||||| Sbjct 1515 GATTAGGTAGTTGTTGTAGTAATTATTCAACAAGCCGACGATGCTTAGCTGGTTTGAGAG 1574 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCAGCAGTGG 285 ||||| |||||||||| ||||| | |||| |||| || ||| | ||||||||||| Sbjct 1575 AATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGCAGTGG 1632 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT--GAAGGC 343 ||||||| ||||||||| ||||| |||| || || | |||| | ||| |||||| Sbjct 1633 AGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGGGTGATCAGAAGGC 1692 Query 344 CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATG--ACGGTACTTGAGGAGGAAG 400 | | |||||||||| | || ||||||| ||| || | |||||||| | |||| Sbjct 1693 TTAATTGCCGTAAAGCTCGTTTCGTCAAGGATTATAGTGCAATCGTACTTGAAGGAGAAG 1752 Query 401 CCCCGGCTAACTACGTGCCAGC 422 ||| | |||||| ||||||||| Sbjct 1753 CCCTGACTAACTTCGTGCCAGC 1774 >seq18118 Length=127 Score = 122 bits (134), Expect = 3e-25 Identities = 96/114 (84%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 1 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 60 Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 61 GAGCGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 113 >seq7709 Length=127 Score = 116 bits (128), Expect = 1e-23 Identities = 95/114 (83%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 1 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 60 Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 61 GAGGGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 113 >seq33115 Length=127 Score = 114 bits (126), Expect = 4e-23 Identities = 95/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || ||| Sbjct 2 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGG 61 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 62 CGGGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 115 >seq18160 Length=127 Score = 114 bits (126), Expect = 4e-23 Identities = 95/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || || Sbjct 121 GTACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGATGG 62 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | || ||||| || | | ||| ||| ||||||||||||||||||| || |||||| Sbjct 61 CGAGTGTTATTCGCATTGACT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 8 >seq3352 Length=127 Score = 105 bits (116), Expect = 2e-20 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| ||||||||||| |||||||||||| || |||| || ||||| || | | |||| Sbjct 2 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCATTGACTG 61 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| ||||||||||||||||||| || |||||| Sbjct 62 GGG-GTAAAGGGTGCGTAGGTGGCTTGTTAAGT 93 >seq20334 Length=127 Score = 100 bits (110), Expect = 9e-19 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 |||| | |||||| ||||||||||| |||||||||||| || |||| || ||||| || | Sbjct 1 GCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCA 60 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | || ||| ||||||||||||||||||| || |||||| Sbjct 61 TTGGCT-GGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 99 >seq29294 Length=127 Score = 87.8 bits (96), Expect = 5e-15 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||||||||| |||||||||||| || |||| || ||||| || | | ||| ||| |||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCATTGACT-GGGTGTAA 59 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| |||||||||| || |||||| Sbjct 60 AGGGGGCGTAGGTGGCTTGTTAAGT 84 >seq23025 Length=75 Score = 77.0 bits (84), Expect = 1e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 75 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 16 Query 446 TAGCGTTATCCG 457 || ||||| || Sbjct 15 GAGTGTTATTCG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496593118592