Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq42963 410 3e-112 seq18118 127 5e-27 seq7709 123 6e-26 seq33115 118 3e-24 seq18160 118 3e-24 seq20334 107 5e-21 seq3352 107 5e-21 seq15901 95.1 3e-17 seq29294 93.3 1e-16 seq30459 89.7 1e-15 seq19673 89.7 1e-15 seq23025 77.0 8e-12 >seq42963 Length=10355 Score = 410 bits (454), Expect = 3e-112 Identities = 329/396 (83%), Gaps = 2/396 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 1401 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 1460 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| ||||||||||||||||||||||| || | ||||||||||||||||| || | Sbjct 1461 GAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGAGGTGAAATCCTGGAG 1520 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||| || | ||||| ||||| |||| | || |||| | |||| || ||||||| Sbjct 1521 CTCAACTCCAGAACTGCCTTTGATACTGAGGATCTTGAGTTCGGGAGAGGTGAGTGGAAC 1580 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||||||| |||||||| |||||||||| | | ||||||||||||||||||||||| Sbjct 1581 TGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTGGCGAAGGCGGCTC 1640 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| | | |||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1641 ACTGGCCCGATACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1700 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 ||||||||||||||||||||||||||| | || || ||| | || | | | ||| Sbjct 1701 TGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTGGGAAGTTTACTT--TTCAGTGG 1758 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| |||| ||||| ||||||||||| Sbjct 1759 CGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTA 1794 >seq18118 Length=127 Score = 127 bits (140), Expect = 5e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 1 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 60 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 |||||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 61 GAGCGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 113 >seq7709 Length=127 Score = 123 bits (136), Expect = 6e-26 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 1 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 60 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 61 GAGGGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 113 >seq33115 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 3 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 62 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 | ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 63 GGGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 115 >seq18160 Length=127 Score = 118 bits (130), Expect = 3e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || ||| Sbjct 120 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGATGGC 61 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || | | |||||| ||||||||||||||||||| || |||||| Sbjct 60 GAGTGTTATTCGCATTGACTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 8 >seq20334 Length=127 Score = 107 bits (118), Expect = 5e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 15 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 74 |||| | |||||| ||||||||||| |||||||||||| || |||| || ||||| || | Sbjct 1 GCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCA 60 Query 75 ATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 | ||||| ||||||||||||||||||| || |||||| Sbjct 61 TTGGCTGGGTGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 99 >seq3352 Length=127 Score = 107 bits (118), Expect = 5e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81 |||||| ||||||||||| |||||||||||| || |||| || ||||| || | | |||| Sbjct 2 CTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCATTGACTG 61 Query 82 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||||||||||||||||| || |||||| Sbjct 62 GGGGTAAAGGGTGCGTAGGTGGCTTGTTAAGT 93 >seq15901 Length=125 Score = 95.1 bits (104), Expect = 3e-17 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| ||||||| | |||| |||||||||||||| |||||||||||| | Sbjct 19 ACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGACCCTGGTAGTCTAT 78 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 79 GCCCTGACCGATGAATA 95 >seq29294 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 30 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA 89 |||||||||| |||||||||||| || |||| || ||||| || | | |||||| ||||| Sbjct 1 GTGCCAGCAGTCGCGGTAATACGGAGAGGGCGAGTGTTATTCGCATTGACTGGGTGTAAA 60 Query 90 GGGTGCGTAGGTGGTTTCTTAAGT 113 ||| |||||||||| || |||||| Sbjct 61 GGGGGCGTAGGTGGCTTGTTAAGT 84 >seq30459 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| ||||||| | |||| |||||||||||||| ||||||||||| | Sbjct 109 ACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGGCCCTGGTAGTCTAT 50 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 49 GCCCTGACCGATGAATA 33 >seq19673 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||||| ||||||| | |||| |||||||||||||| ||||||||||| | Sbjct 109 ACTGACACTGAGGCACGAAAGCATAGGGATCAAACAGGATTAGAGCCCCTGGTAGTCTAT 50 Query 324 GCCGTAAACGATGAATA 340 ||| | | ||||||||| Sbjct 49 GCCCTGACCGATGAATA 33 >seq23025 Length=75 Score = 77.0 bits (84), Expect = 8e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||||| | ||||||| | |||||| ||||||||||| |||||||||||| || |||| Sbjct 75 TACTTGAAGGAGAAGCCCTGACTAACTTCGTGCCAGCAGTCGCGGTAATACGGAGAGGGC 16 Query 61 TAGCGTTATCCG 72 || ||||| || Sbjct 15 GAGTGTTATTCG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202391052544