Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq42963 291 3e-76 seq30474 91.5 5e-16 seq7390 91.5 5e-16 seq14372 86.0 2e-14 seq15125 82.4 3e-13 seq3013 82.4 3e-13 >seq42963 Length=10355 Score = 291 bits (322), Expect = 3e-76 Identities = 360/482 (75%), Gaps = 14/482 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| || ||| || | ||||||||||||| ||||||||| ||| Sbjct 4097 CGAGTCTTAATAGGGCGCCAAGTTCGTTGTAT-TAGACCCGAAACCTAGTGATCTAGCCA 4155 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||| |||||||| | ||||||| |||||| |||||||||| Sbjct 4156 TGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAA 4215 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 4216 GACTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCT 4275 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | ||||| |||||||||| ||||| | | || ||| ||||||||||||||| Sbjct 4276 CCGCGAAAGATATTTAGGTATCGCCTCGGATGAAT-ACCTCAGGGGGTAGAGCACTGGAT 4334 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||| | | || ||||||||||| |||||||||||| | ||| | Sbjct 4335 GGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCTGAGAGTACT 4394 Query 298 ACCGCGGGAGT--GAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | ||||||| | ||| ||||||||| |||||| |||||| || || ||||| Sbjct 4395 ATC-CGGGAGTCACACGGC--GGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGA 4451 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | ||||||||||||| || | ||||||| | || || || || | | || | Sbjct 4452 CCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGA--AAGGATGTGGGAATCCCAAAA 4509 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| | Sbjct 4510 CAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGG 4568 Query 476 TC 477 || Sbjct 4569 TC 4570 >seq30474 Length=127 Score = 91.5 bits (100), Expect = 5e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| ||||||||| || | |||||| ||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGCGGTAGCTAGGGGGGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq7390 Length=127 Score = 91.5 bits (100), Expect = 5e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 89 CTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 ||| ||| |||||||| |||||| | ||| ||||||||| || | |||||| ||| Sbjct 8 CTGAAGGATCGAACCCATGTATGTTGCATAATACCGGGATGAGCGGTAGCTAGGGGCGAA 67 Query 149 AGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||| ||| ||| | ||||| || |||| ||||| |||||||||||| || Sbjct 68 AGGCTAATCAAGCTTAGTGTTAGCTAGTACTCTACGAAATCTATTTAGGTAGAGC 122 >seq14372 Length=127 Score = 86.0 bits (94), Expect = 2e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 ||||||||| || | ||||||||||||||||| ||| ||| | ||||| ||||||| | Sbjct 117 GGGATGAGCGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTTCTCTAC 58 Query 184 GAAAACTATTTAGGTAGTGC 203 |||| |||||||||||| || Sbjct 57 GAAATCTATTTAGGTAGAGC 38 >seq15125 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 ||||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| | Sbjct 117 GGGATGAGCGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTCCTCTAC 58 Query 184 GAAAACTATTTAGGTAGTGC 203 |||| |||||||||||| || Sbjct 57 GAAATCTATTTAGGTAGAGC 38 >seq3013 Length=127 Score = 82.4 bits (90), Expect = 3e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 ||||||||| || | ||||||||||||||||| ||| ||| | ||||| || |||| | Sbjct 117 GGGATGAGCGGTAGCTAGGGGTGAAAGGCTAATCAAGCTTAGTGTTAGCTAGTGCTCTAC 58 Query 184 GAAAACTATTTAGGTAGTGC 203 |||| |||||||||||| || Sbjct 57 GAAATCTATTTAGGTAGAGC 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688464031232