Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq42963 114 2e-23 >seq42963 Length=10355 Score = 114 bits (126), Expect = 2e-23 Identities = 91/108 (84%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||||| | |||||||||||||||| || |||||||||||| ||| Sbjct 3430 GGTGGATGCCTTGGCGATGAGAGGCGATGAAGGACGTGCTACGCTGCGATAAGCTGTGGG 3489 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || ||||||||| ||||||||||||||||||||||| Sbjct 3490 GAG-CTGCGAAGGAGCTTTGATCCACAGATTTCCGAATGGGGAAACCC 3536 Score = 102 bits (112), Expect = 1e-19 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 139 CTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | |||||||| ||| ||||||||||||||||||| | | ||| Sbjct 3624 CTGAATACATAGGAGGTTTTAAGCGAACCCGGGGAACTGAAACATCTAAGTACCCGGAGG 3683 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||| || ||||||||||| ||| |||||||||||||||| Sbjct 3684 AAAGGACATCAACCGAGACTCCGCTAGTAGTGGCGAGCGAA 3724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917782532128