Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq42963 385 2e-104 >seq42963 Length=10355 Score = 385 bits (426), Expect = 2e-104 Identities = 427/566 (75%), Gaps = 24/566 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| ||| |||| || | | |||| | Sbjct 5705 TCGACTTGTTAGTCTCGCAGTCAGGCAGGCTTATGCCATTATACTCGACGAAC-GATTTC 5647 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | |||||||||||| ||||||||| | ||||||||| Sbjct 5646 CGACCGTTCTGAGCCTACCATCGCACGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCA 5588 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| ||||||| || ||||||| || ||| | || | ||||||||||||| Sbjct 5587 GTCAAACTGCCCACCATGCGCTGTCCCGGTTCCGGATAACGGAACGCGGTTAGATATCCA 5528 Query 180 CTACGGTCAGAGTGGTATTTCA-ACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || | || ||||||||||| | ||||||||| | || ||| | || ||| | Sbjct 5527 TAACCATTAGGGTGGTATTTCACATTTCGACTCCACCCCGGCTGGCGCCGGAGCTTCAAA 5468 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 |||| |||||||| |||||||||| | ||||| ||| | |||||| ||| ||||| Sbjct 5467 GTCTACCACCTATTCTACACAAACAGTCACGAATACCAGCGCAAAGCTACAGTAAAGGTG 5408 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 5407 CACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCAC 5348 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || || | |||||||| ||| |||| ||||||||||||||||||||||||||||| Sbjct 5347 TGAGTCTATGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTAC 5288 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 5287 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCT 5228 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 |||||| || | | | ||| ||||||||||||||| |||| Sbjct 5227 TCAATT----------CAGAGCTTG---------CACTCCTCCTCTTAACCTTCCGGCAC 5187 Query 538 CGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||| || ||||| || Sbjct 5186 CGGGCAGGCGTCAGACCCTATACGTC 5161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701255425408