Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq62568 468 2e-129 seq30581 93.3 1e-16 seq3006 93.3 1e-16 >seq62568 Length=2299 Score = 468 bits (518), Expect = 2e-129 Identities = 449/579 (78%), Gaps = 75/579 (13%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGC-CCTGTATCAGTATTTATTGTCACTAC 58 |||||||||||||||||||||| | | |||| ||||||| |||||||||||||| | Sbjct 1605 GTACTCATTCCAATTACAAGACTCTTATCGAGCGCCTGTATTGTTATTTATTGTCACTNC 1546 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1545 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAAGTGGTAGCCA 1486 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1485 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTACGACCATGG 1426 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1425 TAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAATCGTCGCCGT 1366 Query 238 --GCTCAAGG-------CCATGCGATTCGTTA-AGTTATTATGAATCACCA--------A 279 | ||||| ||||||| || | ||||| |||||||||||| | Sbjct 1365 CCCCACAAGGAGGACATGAATGCGATCCGAAAGAGTTACTATGAATCACCAGGAGATTGA 1306 Query 280 GGAGCC-CCGAAGG--GCGTTGGTTTTTTATCTAATAAATACACCCCT-------TCCGA 329 | |||| | || || |||||||| | |||||||||||| |||| | ||| Sbjct 1305 GTAGCCATTGCTGGCTACGCTGGTTTTTAACCTAATAAATACATCCCTCTGCGCATGCGA 1246 Query 330 ----AG-------------------------TCGGGGTTTTTAGCATGTATTAGCTCTAG 360 || ||||| || ||||||||||||||||| Sbjct 1245 GAACAGAGCCGTGAAGCCCCGTCCCCCGCGCTCGGGACCTTGCGCATGTATTAGCTCTAG 1186 Query 361 AATTACCACGGTTATCCATGTAG--------------TAAGGTACTATCAAATAAACGAT 406 |||||||||||||||||| |||| ||| || ||||||||||| || Sbjct 1185 AATTACCACGGTTATCCAAGTAGGTAAAAAAAAGACAAAAGAGACCATCAAATAAACTAT 1126 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGC 465 ||||||||||||||||||| |||||| || | ||||| | |||||||||||||||||| Sbjct 1125 AACTGATTTAATGAGCCATCCGCAGTCTCGCCGTATAAACAAGCTTATACTTAGACATGC 1066 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| Sbjct 1065 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1027 >seq30581 Length=123 Score = 93.3 bits (102), Expect = 1e-16 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 51 >seq3006 Length=127 Score = 93.3 bits (102), Expect = 1e-16 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509384512768