Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq34497 203 8e-48 >seq34497 Length=166879 Score = 203 bits (224), Expect = 8e-48 Identities = 359/517 (69%), Gaps = 6/517 (1%) Strand=Plus/Plus Query 37692 ACGGCGTCGAAAAAGAA-GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAG 37750 |||||| || |||||| ||||| || || ||| |||||||| |||||||||| ||| Sbjct 39834 ACGGCG-CGGAAAAGACCGACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAG 39892 Query 37751 CTCCGCTTCAA-CTTACAAGATGGATTTCC-GCTCGTGACAACGAAAAAATTGCATATCC 37808 | || || || || | | || ||||| | | |||| || || || | ||| | Sbjct 39893 ATGCGGTTTAATCTGGC--GTCGGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGA 39950 Query 37809 GCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGC 37868 || ||| | |||||||||| |||||| | ||||| || || || || ||| Sbjct 39951 AATCGATCGTCCATGAACTGCTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGA 40010 Query 37869 AGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGA 37928 | || || ||||| || ||||||||||||||||||||||||||| |||||||||| Sbjct 40011 ACGACAACGGCGTCCGCATCTGGGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCG 40070 Query 37929 TTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCG 37988 ||||||| |||| |||||||| ||| | ||||| || ||||| ||||| Sbjct 40071 TTTACGGATCGCAGTGGCGCTCATGGCCCGCTCAGGACGGCGGCACAATCGATCAGATTT 40130 Query 37989 CATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTT 38048 | | |||| |||| ||||||| | || || || ||| | |||||||| | Sbjct 40131 CCAACCTGATCGAGATGATCCGCAAAAATCCGGACTCGCGACGCCTGATTGTGAGCGCCT 40190 Query 38049 GGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCT 38108 ||||| || ||| | ||| ||||| ||||||||| || |||| | |||||||| | Sbjct 40191 GGAATCCGGCCGAAGTCGACAAGATGGCGCTGCCGCCCTGCCATTGCTTGTTTCAGTTTT 40250 Query 38109 ATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAG 38168 |||||||||| ||| | |||| ||| | | ||||| || | ||| || | | Sbjct 40251 ATGTCGCCAAGGGCAAGCTGTCCTGCCAGCTCTACCAGCGTTCAGCGGATGTCTTCCTCG 40310 Query 38169 GGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGAC 38205 | ||||||| ||||||||| ||| |||||| |||| Sbjct 40311 GCGTGCCGTTCAACATCGCGTCCTATGCGCTGCTGAC 40347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130535698085450