Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq38569 113 1e-20 >seq38569 Length=123680 Score = 113 bits (124), Expect = 1e-20 Identities = 275/414 (66%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 2497 TACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAA 2556 ||||||| ||| ||||| || || ||| || | |||||||| || |||| ||| Sbjct 14140 TACCTTGCAGATCTGGTTTCACGCTATCCGATCGTCTCGATCGAAGACGGCATGGCGGAA 14081 Query 2557 AACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTT 2616 ||||| ||| || ||||| || || || | |||| || || || | || Sbjct 14080 GACGACATGGATGGCTGGAAGGAACTGACCGACCTGATTGGCGGCAAGTGCCAGCTCGTC 14021 Query 2617 GGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT 2676 || |||||| | ||||| || ||| | ||||| | || || |||| ||| Sbjct 14020 GGCGACGACCTGTTCGTGACCAACGTCACGCGCCTTGCGGACGGCATCA-AGAAGGGGCT 13962 Query 2677 -GCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGC 2735 | || || || || | || || ||||| ||||| | | || || || ||| ||| Sbjct 13961 CGGCAATTCCATTCTGGTGAAGGTCAACCAGATCGGCTCGCTTACCGAGACGCTTGCCGC 13902 Query 2736 TATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAAC 2795 ||||||||||| | | || | ||||| || || | || || || || |||||||| Sbjct 13901 CGTCGAAATGGCGCACAAGGCGGCCTACACCGCCGTGATGTCGCATCGCTCGGGTGAAAC 13842 Query 2796 TGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGG 2855 || ||||| || ||||| ||| | ||||| || || ||| || || || ||||| || Sbjct 13841 CGAGGATTCGACCATCGCCGATCTCGCAGTGGCTACCAACTGCGGGCAGATCAAGACGGG 13782 Query 2856 TTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 || || | ||| | || || | || || |||||||| ||||| || ||||| Sbjct 13781 ATCGCTGGCGCGTGCGGATCGGACCGCGAAGTACAACCAGTTGCTGCGCATCGA 13728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155913820209252