Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq34497 152 8e-32 >seq34497 Length=166879 Score = 152 bits (168), Expect = 8e-32 Identities = 212/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGA 196125 |||| | ||||||||||| || | | | | ||| | |||| || || | || Sbjct 39793 CATGAACCAGTATCACGATCTGCTTGAACGAATTCTCGGCGACGGCGCGGAAAAGACCGA 39852 Query 196126 CCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGA 196185 ||| ||||| || || || |||| ||||| |||||||| || ||||| Sbjct 39853 CCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATGCGGTTTAATCTGGCGTC 39912 Query 196186 CGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCT 196245 || |||||| || | ||||| ||||| || |||||| || ||| | ||||||||||| Sbjct 39913 GGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCGATCGTCCATGAACTGCT 39972 Query 196246 GTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTG 196305 |||||| || || |||||||| ||||||||| |||| |||||||| ||| ||||| Sbjct 39973 GTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGACAACGGCGTCCGCATCTG 40032 Query 196306 GAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 | | ||||||||| ||||| ||| || || || || |||||||| ||||||||| Sbjct 40033 GGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCGTTTACGGATCGCAGTGGCG 40089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770893986122760