Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq41482 100 4e-16 >seq41482 Length=37866 Score = 100 bits (110), Expect = 4e-16 Identities = 360/553 (65%), Gaps = 14/553 (3%) Strand=Plus/Plus Query 162303 AGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGA 162362 |||||| || ||||| || ||||| || | || ||||| || || |||||| || || Sbjct 12308 AGTTCAGCCGGATGAGATTTATAATCTCGCCGCGCAGAGCCATGTCGCGGTTTCGTTCGA 12367 Query 162363 TCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGT 162422 ||||||| || || || | | || || | || | || | | || ||||| | Sbjct 12368 AGAGCCTGAGTATACCGCCAATTCGGATGCGCTCGGTCCGCTGCGTATTCTCGAAGCGAT 12427 Query 162423 CCGTCTTCTTGGTATGGA--ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTT 162480 ||| |||| || | || | | || || | || || || || |||||| Sbjct 12428 CCGCATTCTCGGACTTGAGAAGAAGACCC--GATTTTATCAGGCCTCGACTTCTGAGCTG 12485 Query 162481 TATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCT 162540 || || || |||||||| || || ||||| ||||| || ||| | || || |||| || Sbjct 12486 TACGGACTCGTTCAGGAAACTCCTCAGAAGGAAACGACGCCATTTTACCCCAGATCGCCG 12545 Query 162541 TATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGAC 162600 |||| || || || || || | | |||||||| ||||| | || |||| | Sbjct 12546 TATGCGGTCGCCAAGCTGTACGCATACTGGATCACTGTGAACTATCGCGAGGCTTATGGC 12605 Query 162601 ATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTC 162660 | || | | ||| ||||| |||||||| ||| | | | |||||||| ||| Sbjct 12606 CTGTTCGCGTGCAACGGCATTCTTTTCAATCATGAATCGCCGATCCGCGGAGAGACCTTC 12665 Query 162661 GTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAA-AGTGA-TC 162718 || || || || || || || ||| | || || | | || || || || | || Sbjct 12666 GTTACGCGAAAAATTACGCGCGCTTTGGCGCGCATCAAGCTCGGGCTTCAGGAGAGGGTC 12725 Query 162719 TACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGT--AGA 162776 || || |||||||| ||||| | || || ||||||||||| || ||||| ||| Sbjct 12726 TAT--CTCGGAAACCTGAATGCGCTGCGCGATTGGGGACACGCGCGTGATTACGTTGAGA 12783 Query 162777 GGCTATGTGGTTGATGCTTCAGCAAGA-GAAGCCAGATGATTATGTGATCGCAACTGGTG 162835 || | ||| |||| | ||||| || | || |||| ||||| || ||||| || || | Sbjct 12784 TGCAA--TGGCGGATGTTGCAGCAGGATGTAG-CAGAGGATTACGTCATCGCGACCGGCG 12840 Query 162836 AGCAGTATTCTGT 162848 | ||| | || || Sbjct 12841 AACAGCACTCCGT 12853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690878089045080