Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq53173 233 4e-59 >seq53173 Length=1818 Score = 233 bits (258), Expect = 4e-59 Identities = 225/287 (78%), Gaps = 24/287 (8%) Strand=Plus/Plus Query 55 GTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------ 108 || || ||| |||| | ||||| |||||||||||||||||||||||||||| Sbjct 1454 GTCCCTGGGGCCCAGATCGTTTACCGTGAAAAAATTAGAGTGTTCAAAGCAGGCAGATCC 1513 Query 109 ----CTTTGCT--CGAATACATTAGCATGGAATAATAGAATAGGACG-TGCGGTTCTATT 161 || ||| ||||||||||||||||| ||||| ||||||||| || | ||||| Sbjct 1514 AATTCTCTGCCACCGAATACATTAGCATGGGATAATGGAATAGGACCCTGTCCTCCTATT 1573 Query 162 TT--GTTGGTTT--------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 || |||||||| | ||||| ||||||||||||||||||||| ||||| Sbjct 1574 TTCAGTTGGTTTTGGCAGCGCGAGGACTAGGGTAATGATTAATAGGGATAGTTGGGGGCA 1633 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | | |||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct 1634 TTAATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAA 1693 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || | |||||||||||||||||||||| |||||||||||||||| Sbjct 1694 GCATCTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914680697216